{
    "type": "genome",
    "identifier": "GCA_934121945.1",
    "organism": "uncultured Prevotella sp.",
    "title": "uncultured Prevotella sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934121945.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13506278",
        "wgs_master": "CAKOVM000000000.1",
        "refseq_category": "na",
        "taxid": "159272",
        "species_taxid": "159272",
        "organism_name": "uncultured Prevotella sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_N_21_1514.79",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7745897_bin.79",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/121/945/GCA_934121945.1_ERR7745897_bin.79",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Prevotella sp."
        ],
        "sample_taxid": [
            "159272"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.454 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 65.1,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1561987",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "63799",
        "N50 (bp)": "20352",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.7",
        "Number of CDSs": "1147",
        "Average Protein Length": "348.6",
        "Coding Ratio (%)": "76.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotella corporis",
                "strain": "strain=DSM 18810",
                "accession": "GCA_000430525.1",
                "taxid": 28128,
                "species_taxid": 28128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9431,
                "matched_fragments": 429,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella corporis",
                "strain": "strain=JCM 8529",
                "accession": "GCA_000613365.1",
                "taxid": 28128,
                "species_taxid": 28128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.8743,
                "matched_fragments": 421,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella brunnea",
                "strain": "strain=A2672",
                "accession": "GCA_008016795.1",
                "taxid": 2508867,
                "species_taxid": 2508867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1024,
                "matched_fragments": 218,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=ATCC 25611",
                "accession": "GCA_000519165.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9993,
                "matched_fragments": 88,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella jejuni",
                "strain": "strain=DSM 26989",
                "accession": "GCA_900187995.1",
                "taxid": 1177574,
                "species_taxid": 1177574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9227,
                "matched_fragments": 57,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella falsenii",
                "strain": "strain=JCM 15124",
                "accession": "GCA_000613945.1",
                "taxid": 515414,
                "species_taxid": 515414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5834,
                "matched_fragments": 92,
                "total_fragments": 457,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 65.1,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000430525.1",
                "gtdb_species": "s__Prevotella corporis",
                "ani": 97.9431,
                "matched_fragments": 429,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008016795.1",
                "gtdb_species": "s__Prevotella brunnea",
                "ani": 84.066,
                "matched_fragments": 218,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001953955.1",
                "gtdb_species": "s__Prevotella intermedia",
                "ani": 77.9323,
                "matched_fragments": 91,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_900187995.1",
                "gtdb_species": "s__Prevotella jejuni",
                "ani": 77.9227,
                "matched_fragments": 57,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.22",
                "min_intra_species_ani": "96.57",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000688375.1",
                "gtdb_species": "s__Prevotella sp000688375",
                "ani": 77.7824,
                "matched_fragments": 122,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000613945.1",
                "gtdb_species": "s__Prevotella falsenii",
                "ani": 77.5834,
                "matched_fragments": 92,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003609775.1",
                "gtdb_species": "s__Prevotella melaninogenica_A",
                "ani": 77.4797,
                "matched_fragments": 50,
                "total_fragments": 457,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.226,
        "cell_length": 0.114,
        "doubling_h": null,
        "growth_tmp": 36.755,
        "optimum_tmp": 35.219,
        "optimum_ph": 7.109,
        "genome_size": 3037444.691,
        "gc_content": 45.137,
        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.975,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.025,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella corporis"
    ],
    "_genome_taxon": [
        "uncultured",
        "Prevotella",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella corporis",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "corporis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}