{ "type": "genome", "identifier": "GCA_934129795.1", "organism": "uncultured Bacilli bacterium", "title": "uncultured Bacilli bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934129795.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13470672", "wgs_master": "CAKOXA000000000.1", "refseq_category": "na", "taxid": "224209", "species_taxid": "224209", "organism_name": "uncultured Bacilli bacterium", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_H_2_1640.366", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7738571_bin.366", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/129/795/GCA_934129795.1_ERR7738571_bin.366", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacilli bacterium" ], "sample_taxid": [ "224209" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.498 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1798440", "Number of Sequences": "39", "Longest Sequences (bp)": "301489", "N50 (bp)": "136618", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.7", "Number of CDSs": "1559", "Average Protein Length": "343.6", "Coding Ratio (%)": "89.4", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900538885.1", "gtdb_species": "s__UMGS75 sp900538885", "ani": 79.1683, "matched_fragments": 179, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__UMGS75", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "99.02", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900752975.1", "gtdb_species": "s__UMGS75 sp900752975", "ani": 79.0054, "matched_fragments": 174, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__UMGS75", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017411715.1", "gtdb_species": "s__UMGS1109 sp017411715", "ani": 77.6423, "matched_fragments": 82, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__UMGS1109", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003539625.1", "gtdb_species": "s__CAG-313 sp003539625", "ani": 77.6033, "matched_fragments": 91, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__CAG-313", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_015059015.1", "gtdb_species": "s__UBA1737 sp015059015", "ani": 77.0146, "matched_fragments": 84, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__UBA1737", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017937305.1", "gtdb_species": "s__UBA1737 sp017937305", "ani": 76.8489, "matched_fragments": 65, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__UBA1737", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_904501965.1", "gtdb_species": "s__CAJGCS01 sp904501965", "ani": 76.8381, "matched_fragments": 65, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__CAJGCS01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900539265.1", "gtdb_species": "s__CAG-313 sp900539265", "ani": 76.6831, "matched_fragments": 84, "total_fragments": 581, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__ML615J-28;f__CAG-313;g__CAG-313", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.54", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__ML615J-28", "f__CAG-313", "g__UMGS75", "s__UMGS75 sp934140285" ], "_genome_taxon": [ "uncultured", "Bacilli", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__ML615J-28", "f__CAG-313", "g__UMGS75", "s__UMGS75 sp934140285", "Bacteria", "Bacillota", "I", "Bacilli", "A", "ML615J-28", "CAG-313", "UMGS75", "UMGS75", "sp934140285" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }