{ "type": "genome", "identifier": "GCA_934148245.1", "organism": "uncultured Clostridia bacterium", "title": "uncultured Clostridia bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934148245.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13484282", "wgs_master": "CAKPCY000000000.1", "refseq_category": "na", "taxid": "244328", "species_taxid": "244328", "organism_name": "uncultured Clostridia bacterium", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_B_6_2154.5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7737619_bin.5", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/148/245/GCA_934148245.1_ERR7737619_bin.5", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Clostridia bacterium" ], "sample_taxid": [ "244328" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.439 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.71, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1615649", "Number of Sequences": "28", "Longest Sequences (bp)": "206376", "N50 (bp)": "106454", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.0", "Number of CDSs": "1440", "Average Protein Length": "328.3", "Coding Ratio (%)": "87.8", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_000473995.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 75.3356, "matched_fragments": 53, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_001657435.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 75.318, "matched_fragments": 51, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tarantellae", "strain": "strain=DSM 3997", "accession": "GCA_009295725.1", "taxid": 39493, "species_taxid": 39493, "relation_to_type": "type", "validated": true, "ani": 75.2071, "matched_fragments": 51, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tepidum", "strain": "strain=IEH 97212", "accession": "GCA_002008345.1", "taxid": 1962263, "species_taxid": 1962263, "relation_to_type": "type", "validated": true, "ani": 74.9287, "matched_fragments": 50, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium scatologenes", "strain": "strain=ATCC 25775", "accession": "GCA_000968375.1", "taxid": 1548, "species_taxid": 1548, "relation_to_type": "type", "validated": true, "ani": 74.8493, "matched_fragments": 50, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.71, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017625465.1", "gtdb_species": "s__Scatovivens sp017625465", "ani": 79.2344, "matched_fragments": 177, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017456555.1", "gtdb_species": "s__Scatovivens sp017456555", "ani": 78.7103, "matched_fragments": 173, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017517685.1", "gtdb_species": "s__Scatovivens sp017517685", "ani": 78.5876, "matched_fragments": 146, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900553685.1", "gtdb_species": "s__Scatovivens faecipullorum", "ani": 78.4801, "matched_fragments": 192, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017536685.1", "gtdb_species": "s__Scatovivens sp017536685", "ani": 78.4679, "matched_fragments": 155, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900768805.1", "gtdb_species": "s__Scatovivens sp900768805", "ani": 77.8468, "matched_fragments": 143, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016290095.1", "gtdb_species": "s__Scatovivens sp016290095", "ani": 77.7777, "matched_fragments": 138, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900556695.1", "gtdb_species": "s__CAG-269 sp900556695", "ani": 77.692, "matched_fragments": 88, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017477355.1", "gtdb_species": "s__Scatovivens sp017477355", "ani": 77.6428, "matched_fragments": 104, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905215845.1", "gtdb_species": "s__CAG-269 sp905215845", "ani": 77.4801, "matched_fragments": 78, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900754285.1", "gtdb_species": "s__CAG-269 sp900754285", "ani": 77.4064, "matched_fragments": 84, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.84", "min_intra_species_ani": "99.84", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900557195.1", "gtdb_species": "s__CAG-492 sp900557195", "ani": 77.3603, "matched_fragments": 115, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017528085.1", "gtdb_species": "s__Scatovivens sp017528085", "ani": 77.3057, "matched_fragments": 115, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Scatovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900553985.1", "gtdb_species": "s__CAG-269 sp900553985", "ani": 77.2353, "matched_fragments": 116, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "98.04", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_001916065.1", "gtdb_species": "s__CAG-269 sp001916065", "ani": 77.2351, "matched_fragments": 108, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900753165.1", "gtdb_species": "s__CAG-269 sp900753165", "ani": 77.2024, "matched_fragments": 94, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.62", "min_intra_species_ani": "99.62", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905200315.1", "gtdb_species": "s__Merdicola sp905200315", "ani": 77.1215, "matched_fragments": 109, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__Merdicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002314935.1", "gtdb_species": "s__CAG-452 sp002314935", "ani": 76.8527, "matched_fragments": 88, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-452", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__TANB77", "f__CAG-508", "g__Scatovivens", "s__Scatovivens sp934140005" ], "_genome_taxon": [ "uncultured", "Clostridia", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__TANB77", "f__CAG-508", "g__Scatovivens", "s__Scatovivens sp934140005", "Bacteria", "Bacillota", "A", "Clostridia", "TANB77", "CAG-508", "Scatovivens", "Scatovivens", "sp934140005" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }