{
    "type": "genome",
    "identifier": "GCA_934180065.1",
    "organism": "uncultured Clostridia bacterium",
    "title": "uncultured Clostridia bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934180065.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13503539",
        "wgs_master": "CAKPRA000000000.1",
        "refseq_category": "na",
        "taxid": "244328",
        "species_taxid": "244328",
        "organism_name": "uncultured Clostridia bacterium",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_M_5_2492.127",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7745719_bin.127",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/180/065/GCA_934180065.1_ERR7745719_bin.127",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Clostridia bacterium"
        ],
        "sample_taxid": [
            "244328"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.524 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1924587",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "109874",
        "N50 (bp)": "36300",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "27.0",
        "Number of CDSs": "1784",
        "Average Protein Length": "295.5",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium drakei",
                "strain": "strain=SL1",
                "accession": "GCA_000633595.2",
                "taxid": 332101,
                "species_taxid": 332101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9726,
                "matched_fragments": 54,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium drakei",
                "strain": "strain=SL1",
                "accession": "GCA_003096175.1",
                "taxid": 332101,
                "species_taxid": 332101,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.953,
                "matched_fragments": 56,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium butyricum",
                "strain": "strain=NBRC 13949",
                "accession": "GCA_006742065.1",
                "taxid": 1492,
                "species_taxid": 1492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8616,
                "matched_fragments": 60,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium butyricum",
                "strain": "strain=DSM 10702",
                "accession": "GCA_014131795.1",
                "taxid": 1492,
                "species_taxid": 1492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8563,
                "matched_fragments": 61,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium butyricum",
                "strain": "strain=DSM 10702",
                "accession": "GCA_000409755.1",
                "taxid": 1492,
                "species_taxid": 1492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8073,
                "matched_fragments": 58,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium carboxidivorans",
                "strain": "strain=P7",
                "accession": "GCA_000175595.1",
                "taxid": 217159,
                "species_taxid": 217159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.803,
                "matched_fragments": 59,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium carboxidivorans",
                "strain": "strain=P7",
                "accession": "GCA_001038625.1",
                "taxid": 217159,
                "species_taxid": 217159,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7836,
                "matched_fragments": 62,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium butyricum",
                "strain": "strain=NBRC 13949",
                "accession": "GCA_007992895.1",
                "taxid": 1492,
                "species_taxid": 1492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7599,
                "matched_fragments": 59,
                "total_fragments": 596,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000434335.1",
                "gtdb_species": "s__CAG-492 sp000434335",
                "ani": 83.2651,
                "matched_fragments": 212,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.09",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017937285.1",
                "gtdb_species": "s__CAG-492 sp017937285",
                "ani": 80.2725,
                "matched_fragments": 270,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017625035.1",
                "gtdb_species": "s__CAG-492 sp017625035",
                "ani": 79.9721,
                "matched_fragments": 245,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017512025.1",
                "gtdb_species": "s__CAG-492 sp017512025",
                "ani": 79.7378,
                "matched_fragments": 197,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017939755.1",
                "gtdb_species": "s__CAG-492 sp017939755",
                "ani": 79.6936,
                "matched_fragments": 222,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017515985.1",
                "gtdb_species": "s__CAG-492 sp017515985",
                "ani": 79.5657,
                "matched_fragments": 199,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017404545.1",
                "gtdb_species": "s__CAG-492 sp017404545",
                "ani": 79.4449,
                "matched_fragments": 231,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017470645.1",
                "gtdb_species": "s__CAG-492 sp017470645",
                "ani": 78.1471,
                "matched_fragments": 117,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000434015.1",
                "gtdb_species": "s__CAG-492 sp000434015",
                "ani": 78.102,
                "matched_fragments": 175,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002633185.1",
                "gtdb_species": "s__CAG-492 sp002633185",
                "ani": 77.9389,
                "matched_fragments": 98,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902406115.1",
                "gtdb_species": "s__CAG-273 sp902406115",
                "ani": 77.6595,
                "matched_fragments": 112,
                "total_fragments": 596,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.49",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__TANB77",
        "f__CAG-508",
        "g__CAG-492",
        "s__CAG-492 sp934180065"
    ],
    "_genome_taxon": [
        "uncultured",
        "Clostridia",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__TANB77",
        "f__CAG-508",
        "g__CAG-492",
        "s__CAG-492 sp934180065",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "TANB77",
        "CAG-508",
        "CAG-492",
        "CAG-492",
        "sp934180065"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}