{ "type": "genome", "identifier": "GCA_934180115.1", "organism": "uncultured Lactococcus sp.", "title": "uncultured Lactococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934180115.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13484530", "wgs_master": "CAKPRB000000000.1", "refseq_category": "na", "taxid": "167973", "species_taxid": "167973", "organism_name": "uncultured Lactococcus sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_H_17_1555.37", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7738180_bin.37", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/180/115/GCA_934180115.1_ERR7738180_bin.37", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lactococcus sp." ], "sample_taxid": [ "167973" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.480 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1663745", "Number of Sequences": "61", "Longest Sequences (bp)": "120793", "N50 (bp)": "46755", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "1562", "Average Protein Length": "307.6", "Coding Ratio (%)": "86.6", "Number of rRNAs": "1", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lactococcus taiwanensis", "strain": "strain=NBRC 109049", "accession": "GCA_014905395.1", "taxid": 1151742, "species_taxid": 1151742, "relation_to_type": "type", "validated": true, "ani": 98.8807, "matched_fragments": 516, "total_fragments": 523, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactococcus lactis subsp. lactis", "strain": "strain=ATCC 19435", "accession": "GCA_001456385.1", "taxid": 1360, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 84.0292, "matched_fragments": 299, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. lactis", "strain": "strain=ATCC 19435", "accession": "GCA_004354485.1", "taxid": 1360, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 83.9941, "matched_fragments": 298, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis", "strain": "strain=ATCC 19435", "accession": "GCA_900099625.1", "taxid": 1358, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 83.9817, "matched_fragments": 299, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. lactis", "strain": "strain=NBRC 100933", "accession": "GCA_001514475.1", "taxid": 1360, "species_taxid": 1358, "relation_to_type": "suspected-type", "validated": true, "ani": 83.8735, "matched_fragments": 304, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. hordniae", "strain": "strain=DSM 20450", "accession": "GCA_002441785.1", "taxid": 203404, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 83.8718, "matched_fragments": 280, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. hordniae", "strain": "strain=CCUG 32210T", "accession": "GCA_008692945.1", "taxid": 203404, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 83.8695, "matched_fragments": 276, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus lactis subsp. hordniae", "strain": "strain=NBRC 100931", "accession": "GCA_001591725.1", "taxid": 203404, "species_taxid": 1358, "relation_to_type": "type", "validated": true, "ani": 83.7224, "matched_fragments": 278, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus cremoris", "strain": "strain=ATCC 19257", "accession": "GCA_002441765.1", "taxid": 1359, "species_taxid": 1359, "relation_to_type": "type", "validated": true, "ani": 81.7237, "matched_fragments": 264, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus cremoris", "strain": "strain=ATCC 19257", "accession": "GCA_004354515.1", "taxid": 1359, "species_taxid": 1359, "relation_to_type": "type", "validated": true, "ani": 81.716, "matched_fragments": 269, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus cremoris subsp. cremoris", "strain": "strain=NBRC 100676", "accession": "GCA_001591705.1", "taxid": 2816960, "species_taxid": 1359, "relation_to_type": "type", "validated": true, "ani": 81.6974, "matched_fragments": 279, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus cremoris subsp. tructae", "strain": "strain=DSM 21502", "accession": "GCA_002441825.1", "taxid": 542833, "species_taxid": 1359, "relation_to_type": "type", "validated": true, "ani": 81.6455, "matched_fragments": 290, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus allomyrinae", "strain": "strain=1JSPR-7", "accession": "GCA_003627095.1", "taxid": 2419773, "species_taxid": 2419773, "relation_to_type": "type", "validated": true, "ani": 79.401, "matched_fragments": 188, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus protaetiae", "strain": "strain=KACC 19320", "accession": "GCA_006965445.1", "taxid": 2592653, "species_taxid": 2592653, "relation_to_type": "type", "validated": true, "ani": 79.0792, "matched_fragments": 209, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus formosensis subsp. bovis", "strain": "strain=LMG 30663", "accession": "GCA_018403725.1", "taxid": 1850438, "species_taxid": 1281486, "relation_to_type": "type", "validated": true, "ani": 78.7376, "matched_fragments": 94, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactococcus petauri", "strain": "strain=159469", "accession": "GCA_002154895.1", "taxid": 1940789, "species_taxid": 1940789, "relation_to_type": "type", "validated": true, "ani": 78.5334, "matched_fragments": 104, "total_fragments": 523, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014905395.1", "gtdb_species": "s__Lactococcus taiwanensis", "ani": 98.8807, "matched_fragments": 516, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_900099625.1", "gtdb_species": "s__Lactococcus lactis", "ani": 83.9817, "matched_fragments": 299, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "97.03", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 223, "status": "-" }, { "accession": "GCF_001591705.1", "gtdb_species": "s__Lactococcus cremoris", "ani": 81.6714, "matched_fragments": 280, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006965445.1", "gtdb_species": "s__Lactococcus sp006965445", "ani": 79.0883, "matched_fragments": 208, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002154895.1", "gtdb_species": "s__Lactococcus petauri", "ani": 78.5331, "matched_fragments": 104, "total_fragments": 523, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "96.82", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.79", "num_clustered_genomes": 32, 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