{ "type": "genome", "identifier": "GCA_934196655.1", "organism": "uncultured Limosilactobacillus sp.", "title": "uncultured Limosilactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934196655.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13520207", "wgs_master": "CAKPWN000000000.1", "refseq_category": "na", "taxid": "2837629", "species_taxid": "2837629", "organism_name": "uncultured Limosilactobacillus sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_K_17_1778.203", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7738598_bin.203", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/196/655/GCA_934196655.1_ERR7738598_bin.203", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Limosilactobacillus sp." ], "sample_taxid": [ "2837629" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.543 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1900162", "Number of Sequences": "22", "Longest Sequences (bp)": "400432", "N50 (bp)": "167062", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.1", "Number of CDSs": "1780", "Average Protein Length": "307.2", "Coding Ratio (%)": "86.3", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limosilactobacillus mucosae", "strain": "strain=DSM 13345", "accession": "GCA_001436025.1", "taxid": 97478, "species_taxid": 97478, "relation_to_type": "type", "validated": true, "ani": 96.8404, "matched_fragments": 558, "total_fragments": 621, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Limosilactobacillus fermentum", "strain": "strain=ATCC 14931", "accession": "GCA_000159215.1", "taxid": 1613, "species_taxid": 1613, "relation_to_type": "type", 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"matched_fragments": 89, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001027985.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 78.2994, "matched_fragments": 78, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus gorillae", "strain": "strain=KZ01", "accession": "GCA_001293735.1", "taxid": 1450649, "species_taxid": 1450649, "relation_to_type": "type", "validated": true, "ani": 78.2824, "matched_fragments": 63, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001435935.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 78.2778, "matched_fragments": 77, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus portuensis", "strain": "strain=c11Ua_112_M", "accession": "GCA_014838735.1", "taxid": 2742601, "species_taxid": 2742601, "relation_to_type": "type", "validated": true, "ani": 78.0726, "matched_fragments": 61, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus oris", "strain": "strain=DSM 4864", "accession": "GCA_001434465.1", "taxid": 1632, "species_taxid": 1632, "relation_to_type": "type", "validated": true, "ani": 77.935, "matched_fragments": 85, "total_fragments": 621, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001436025.1", "gtdb_species": "s__Limosilactobacillus mucosae", "ani": 96.8404, "matched_fragments": 558, "total_fragments": 621, "gtdb_taxonomy": 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