{ "type": "genome", "identifier": "GCA_934229535.1", "organism": "uncultured Anaeroplasmataceae bacterium", "title": "uncultured Anaeroplasmataceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934229535.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13481650", "wgs_master": "CAKQDS000000000.1", "refseq_category": "na", "taxid": "658266", "species_taxid": "658266", "organism_name": "uncultured Anaeroplasmataceae bacterium", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_E_2_1148.115", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7738254_bin.115", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/229/535/GCA_934229535.1_ERR7738254_bin.115", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Anaeroplasmataceae bacterium" ], "sample_taxid": [ "658266" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.512 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1861640", "Number of Sequences": "61", "Longest Sequences (bp)": "134054", "N50 (bp)": "48432", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.2", "Number of CDSs": "1714", "Average Protein Length": "328.6", "Coding Ratio (%)": "90.8", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900770055.1", "gtdb_species": "s__Anaeroplasma sp900770055", "ani": 77.3698, "matched_fragments": 78, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900767915.1", "gtdb_species": "s__Anaeroplasma sp900767915", "ani": 77.3537, "matched_fragments": 122, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018715825.1", "gtdb_species": "s__Anaeroplasma faecigallinarum", "ani": 77.1188, "matched_fragments": 61, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900547045.1", "gtdb_species": "s__CAG-307 sp900547045", "ani": 77.0575, "matched_fragments": 54, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__CAG-307", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.73", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_017449215.1", "gtdb_species": "s__Anaeroplasma sp017449215", "ani": 76.974, "matched_fragments": 81, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.35", "min_intra_species_ani": "95.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016280975.1", "gtdb_species": "s__Anaeroplasma sp016280975", "ani": 76.6262, "matched_fragments": 61, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.20", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.69", "min_intra_species_af": "0.69", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017441525.1", "gtdb_species": "s__Anaeroplasma sp017441525", "ani": 76.4849, "matched_fragments": 72, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905236105.1", "gtdb_species": "s__Anaeroplasma sp905236105", "ani": 75.8433, "matched_fragments": 55, "total_fragments": 586, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2199979.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Acholeplasmatales", "f__Anaeroplasmataceae", "g__CAKQDS01", "s__CAKQDS01 sp934229535" ], "_genome_taxon": [ "uncultured", "Anaeroplasmataceae", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Acholeplasmatales", "f__Anaeroplasmataceae", "g__CAKQDS01", "s__CAKQDS01 sp934229535", "Bacteria", "Bacillota", "I", "Bacilli", "A", "Acholeplasmatales", "Anaeroplasmataceae", "CAKQDS01", "CAKQDS01", "sp934229535" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }