{ "type": "genome", "identifier": "GCA_934229705.1", "organism": "uncultured Streptococcus sp.", "title": "uncultured Streptococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934229705.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13522922", "wgs_master": "CAKQDV000000000.1", "refseq_category": "na", "taxid": "83427", "species_taxid": "83427", "organism_name": "uncultured Streptococcus sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_A_17_1704.19", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7745376_bin.19", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/229/705/GCA_934229705.1_ERR7745376_bin.19", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Streptococcus sp." ], "sample_taxid": [ "83427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.536 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1865006", "Number of Sequences": "48", "Longest Sequences (bp)": "261829", "N50 (bp)": "58766", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.9", "Number of CDSs": "1723", "Average Protein Length": "310.1", "Coding Ratio (%)": "85.9", "Number of rRNAs": "0", "Number of tRNAs": "18", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus salivarius", "strain": "strain=ATCC 7073", "accession": "GCA_900143035.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 88.7281, "matched_fragments": 517, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus salivarius", "strain": "strain=JCM 5707", "accession": "GCA_019972895.1", "taxid": 1304, "species_taxid": 1304, "relation_to_type": "suspected-type", "validated": true, "ani": 88.7208, 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"total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=ATCC 19258", "accession": "GCA_004354505.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 87.4814, "matched_fragments": 437, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=DSM 20617", "accession": "GCA_019972875.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 87.3843, "matched_fragments": 443, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus thermophilus", "strain": "strain=ATCC 19258", "accession": "GCA_010120595.1", "taxid": 1308, "species_taxid": 1308, "relation_to_type": "type", "validated": true, "ani": 87.3628, "matched_fragments": 461, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 79.5045, "matched_fragments": 113, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 78.583, "matched_fragments": 85, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 78.2635, "matched_fragments": 53, "total_fragments": 597, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010604095.1", "gtdb_species": "s__Streptococcus sp000187445", "ani": 96.1425, "matched_fragments": 521, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.94", "min_intra_species_ani": "96.18", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.80", "num_clustered_genomes": 19, "status": "conclusive" }, { "accession": "GCF_009738225.1", "gtdb_species": "s__Streptococcus sp001556435", "ani": 88.7659, "matched_fragments": 528, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.11", "min_intra_species_ani": "95.45", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 79, "status": "-" }, { "accession": "GCF_000785515.1", "gtdb_species": "s__Streptococcus salivarius", "ani": 88.7012, "matched_fragments": 522, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.08", "min_intra_species_ani": "95.32", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 131, "status": "-" }, { "accession": "GCF_000188295.1", "gtdb_species": "s__Streptococcus vestibularis", "ani": 88.3547, "matched_fragments": 459, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCA_003521145.1", "gtdb_species": "s__Streptococcus sp003521145", "ani": 87.7881, "matched_fragments": 380, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010120595.1", "gtdb_species": "s__Streptococcus thermophilus", "ani": 87.3644, "matched_fragments": 461, "total_fragments": 597, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.81", "num_clustered_genomes": 130, "status": "-" } ] }, 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"c__Bacilli", "o__Lactobacillales", "f__Streptococcaceae", "g__Streptococcus", "s__Streptococcus sp934229725", "Bacteria", "Bacillota", "Bacilli", "Lactobacillales", "Streptococcaceae", "Streptococcus", "Streptococcus", "sp934229725" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }