{
    "type": "genome",
    "identifier": "GCA_934230305.1",
    "organism": "uncultured Limosilactobacillus sp.",
    "title": "uncultured Limosilactobacillus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934230305.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13492781",
        "wgs_master": "CAKQES000000000.1",
        "refseq_category": "na",
        "taxid": "2837629",
        "species_taxid": "2837629",
        "organism_name": "uncultured Limosilactobacillus sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_H_4_2261.43",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7745561_bin.43",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/230/305/GCA_934230305.1_ERR7745561_bin.43",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Limosilactobacillus sp."
        ],
        "sample_taxid": [
            "2837629"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.476 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1646940",
        "Number of Sequences": "114",
        "Longest Sequences (bp)": "94447",
        "N50 (bp)": "25394",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.2",
        "Number of CDSs": "1606",
        "Average Protein Length": "292.9",
        "Coding Ratio (%)": "85.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=DSM 20052",
                "accession": "GCA_013394085.1",
                "taxid": 1613,
                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1981,
                "matched_fragments": 447,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=ATCC 14931",
                "accession": "GCA_000159215.1",
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                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.1664,
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                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus fermentum",
                "strain": "strain=B1 28",
                "accession": "GCA_005341425.1",
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                "species_taxid": 1613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0573,
                "matched_fragments": 454,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Limosilactobacillus gorillae",
                "strain": "strain=KZ01",
                "accession": "GCA_001293735.1",
                "taxid": 1450649,
                "species_taxid": 1450649,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus ingluviei",
                "strain": "strain=DSM 15946",
                "accession": "GCA_001435775.1",
                "taxid": 148604,
                "species_taxid": 148604,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9763,
                "matched_fragments": 115,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Limosilactobacillus panis",
                "strain": "strain=DSM 6035",
                "accession": "GCA_001027985.1",
                "taxid": 47493,
                "species_taxid": 47493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2572,
                "matched_fragments": 65,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013394085.1",
                "gtdb_species": "s__Limosilactobacillus fermentum",
                "ani": 98.1981,
                "matched_fragments": 447,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.60",
                "num_clustered_genomes": 102,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001293735.1",
                "gtdb_species": "s__Limosilactobacillus gorillae",
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                "matched_fragments": 270,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012843675.1",
                "gtdb_species": "s__Limosilactobacillus sp012843675",
                "ani": 78.2943,
                "matched_fragments": 63,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000160835.1",
                "gtdb_species": "s__Limosilactobacillus antri",
                "ani": 78.0922,
                "matched_fragments": 80,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001435775.1",
                "gtdb_species": "s__Limosilactobacillus ingluviei",
                "ani": 77.9763,
                "matched_fragments": 115,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.51",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_905214235.1",
                "gtdb_species": "s__Limosilactobacillus sp905214235",
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                "matched_fragments": 68,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002940945.1",
                "gtdb_species": "s__Limosilactobacillus pontis_A",
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                "matched_fragments": 59,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019117285.1",
                "gtdb_species": "s__Limosilactobacillus intestinigallinarum",
                "ani": 77.6981,
                "matched_fragments": 75,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019118465.1",
                "gtdb_species": "s__Limosilactobacillus faecipullorum",
                "ani": 77.6927,
                "matched_fragments": 57,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001435935.1",
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                "ani": 77.3225,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus",
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                "mean_intra_species_ani": "99.95",
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                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus fermentum"
    ],
    "_genome_taxon": [
        "uncultured",
        "Limosilactobacillus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Limosilactobacillus",
        "s__Limosilactobacillus fermentum",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Limosilactobacillus",
        "Limosilactobacillus",
        "fermentum"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}