{
    "type": "genome",
    "identifier": "GCA_934233785.1",
    "organism": "uncultured Mitsuokella sp.",
    "title": "uncultured Mitsuokella sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934233785.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13473459",
        "wgs_master": "CAKQGP000000000.1",
        "refseq_category": "na",
        "taxid": "453120",
        "species_taxid": "453120",
        "organism_name": "uncultured Mitsuokella sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_D_17_CHE1007SZ.92",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7738580_bin.92",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/233/785/GCA_934233785.1_ERR7738580_bin.92",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Mitsuokella sp."
        ],
        "sample_taxid": [
            "453120"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Nepal"
        ],
        "sample_host_location_id": [],
        "data_size": "0.667 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2376554",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "465722",
        "N50 (bp)": "269032",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.6",
        "Number of CDSs": "2207",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mitsuokella multacida",
                "strain": "strain=DSM 20544",
                "accession": "GCA_000155955.1",
                "taxid": 52226,
                "species_taxid": 52226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.02,
                "matched_fragments": 702,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mitsuokella jalaludinii",
                "strain": "strain=DSM 13811",
                "accession": "GCA_000702905.1",
                "taxid": 187979,
                "species_taxid": 187979,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.444,
                "matched_fragments": 619,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas montiformis",
                "strain": "strain=WCA-380-WT-3B3",
                "accession": "GCA_009697385.1",
                "taxid": 2652285,
                "species_taxid": 2652285,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0767,
                "matched_fragments": 190,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000160495.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 78.3419,
                "matched_fragments": 225,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas sputigena",
                "strain": "strain=ATCC 35185",
                "accession": "GCA_000208405.1",
                "taxid": 69823,
                "species_taxid": 69823,
                "relation_to_type": "neotype",
                "validated": true,
                "ani": 78.3283,
                "matched_fragments": 225,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas ruminantium subsp. ruminantium",
                "strain": "strain=ATCC 12561",
                "accession": "GCA_000424065.1",
                "taxid": 114196,
                "species_taxid": 971,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9251,
                "matched_fragments": 127,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas felix",
                "strain": "strain=Marseille-P3560",
                "accession": "GCA_900186465.1",
                "taxid": 1944634,
                "species_taxid": 1944634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5343,
                "matched_fragments": 153,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas timonae",
                "strain": "strain=Marseille-Q3039",
                "accession": "GCA_014250475.1",
                "taxid": 2754044,
                "species_taxid": 2754044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3514,
                "matched_fragments": 177,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenomonas infelix",
                "strain": "strain=ATCC 43532",
                "accession": "GCA_000234095.1",
                "taxid": 135082,
                "species_taxid": 135082,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1803,
                "matched_fragments": 124,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000155955.1",
                "gtdb_species": "s__Mitsuokella multacida",
                "ani": 97.02,
                "matched_fragments": 702,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000702905.1",
                "gtdb_species": "s__Mitsuokella jalaludinii",
                "ani": 90.3996,
                "matched_fragments": 621,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_902364065.1",
                "gtdb_species": "s__Mitsuokella sp003458855",
                "ani": 84.0666,
                "matched_fragments": 519,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.62",
                "min_intra_species_ani": "95.79",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.62",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_900552565.1",
                "gtdb_species": "s__Mitsuokella sp900552565",
                "ani": 83.908,
                "matched_fragments": 443,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902780535.1",
                "gtdb_species": "s__Selenomonas_C sp902780535",
                "ani": 80.9261,
                "matched_fragments": 342,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "96.14",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900315575.1",
                "gtdb_species": "s__Selenomonas_C sp900315575",
                "ani": 80.9208,
                "matched_fragments": 339,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
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                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.63",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900318215.1",
                "gtdb_species": "s__Selenomonas_C sp900318215",
                "ani": 80.8014,
                "matched_fragments": 318,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Selenomonas_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.35",
                "min_intra_species_ani": "97.85",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000469545.1",
                "gtdb_species": "s__Mitsuokella sp000469545",
                "ani": 79.0386,
                "matched_fragments": 275,
                "total_fragments": 784,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Mitsuokella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
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                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 38.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2493557.0,
        "gc_content": 58.01,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Mitsuokella",
        "s__Mitsuokella multacida"
    ],
    "_genome_taxon": [
        "uncultured",
        "Mitsuokella",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_C",
        "c__Negativicutes",
        "o__Selenomonadales",
        "f__Selenomonadaceae",
        "g__Mitsuokella",
        "s__Mitsuokella multacida",
        "Bacteria",
        "Bacillota",
        "C",
        "Negativicutes",
        "Selenomonadales",
        "Selenomonadaceae",
        "Mitsuokella",
        "Mitsuokella",
        "multacida"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}