{
    "type": "genome",
    "identifier": "GCA_934255045.1",
    "organism": "uncultured Coprococcus sp.",
    "title": "uncultured Coprococcus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934255045.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13509571",
        "wgs_master": "CAKQNJ000000000.1",
        "refseq_category": "na",
        "taxid": "458253",
        "species_taxid": "458253",
        "organism_name": "uncultured Coprococcus sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_E_16_1654.250",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/16",
        "asm_name": "ERR7746365_bin.250",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/255/045/GCA_934255045.1_ERR7746365_bin.250",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-16",
    "dateModified": "2022-04-16",
    "datePublished": "2022-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Coprococcus sp."
        ],
        "sample_taxid": [
            "458253"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.814 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2859470",
        "Number of Sequences": "27",
        "Longest Sequences (bp)": "377030",
        "N50 (bp)": "174671",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.3",
        "Number of CDSs": "2442",
        "Average Protein Length": "348.5",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_025149915.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.1635,
                "matched_fragments": 696,
                "total_fragments": 941,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus eutactus",
                "strain": "strain=ATCC 27759",
                "accession": "GCA_000154425.1",
                "taxid": 33043,
                "species_taxid": 33043,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.0065,
                "matched_fragments": 700,
                "total_fragments": 941,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Wujia chipingensis",
                "strain": "strain=NSJ-4",
                "accession": "GCA_014337155.1",
                "taxid": 2763670,
                "species_taxid": 2763670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.501,
                "matched_fragments": 99,
                "total_fragments": 941,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ruminantium",
                "strain": "strain=ATCC 17233",
                "accession": "GCA_900167085.1",
                "taxid": 42322,
                "species_taxid": 42322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3615,
                "matched_fragments": 61,
                "total_fragments": 941,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001404675.1",
                "gtdb_species": "s__Coprococcus eutactus_A",
                "ani": 95.7293,
                "matched_fragments": 816,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 34,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900557435.1",
                "gtdb_species": "s__Coprococcus sp900557435",
                "ani": 88.8321,
                "matched_fragments": 442,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000154425.1",
                "gtdb_species": "s__Coprococcus eutactus",
                "ani": 88.0065,
                "matched_fragments": 700,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.02",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900548315.1",
                "gtdb_species": "s__Coprococcus sp900548315",
                "ani": 87.4454,
                "matched_fragments": 479,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900767685.1",
                "gtdb_species": "s__Coprococcus sp900767685",
                "ani": 87.3713,
                "matched_fragments": 529,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900548215.1",
                "gtdb_species": "s__Coprococcus sp900548215",
                "ani": 86.9579,
                "matched_fragments": 581,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.00",
                "min_intra_species_ani": "97.92",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016297325.1",
                "gtdb_species": "s__Coprococcus sp016297325",
                "ani": 85.4255,
                "matched_fragments": 552,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003482105.1",
                "gtdb_species": "s__Coprococcus sp000433075",
                "ani": 79.4798,
                "matched_fragments": 219,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.02",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017624085.1",
                "gtdb_species": "s__Coprococcus sp017624085",
                "ani": 79.2203,
                "matched_fragments": 130,
                "total_fragments": 941,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.117,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 5.775,
        "genome_size": 3287902.0,
        "gc_content": 42.676,
        "coding_genes": 2985.0,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Coprococcus",
        "s__Coprococcus aceti"
    ],
    "_genome_taxon": [
        "uncultured",
        "Coprococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Coprococcus",
        "s__Coprococcus aceti",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Coprococcus",
        "Coprococcus",
        "aceti"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}