{ "type": "genome", "identifier": "GCA_934270975.1", "organism": "uncultured Klebsiella sp.", "title": "uncultured Klebsiella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934270975.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13484732", "wgs_master": "CAKQQL000000000.1", "refseq_category": "na", "taxid": "284011", "species_taxid": "284011", "organism_name": "uncultured Klebsiella sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_F_4_1629.38", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7745903_bin.38", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/270/975/GCA_934270975.1_ERR7745903_bin.38", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Klebsiella sp." ], "sample_taxid": [ "284011" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "1.238 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4297047", "Number of Sequences": "582", "Longest Sequences (bp)": "79442", "N50 (bp)": "11015", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.3", "Number of CDSs": "3569", "Average Protein Length": "305.4", "Coding Ratio (%)": "76.1", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella aerogenes", "strain": "strain=KCTC 2190", "accession": "GCA_000215745.1", "taxid": 548, "species_taxid": 548, "relation_to_type": "type", "validated": true, "ani": 98.6126, "matched_fragments": 1079, "total_fragments": 1133, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella aerogenes", "strain": "strain=FDAARGOS 1442", "accession": "GCA_019048125.1", "taxid": 548, "species_taxid": 548, "relation_to_type": "type", "validated": true, "ani": 98.6086, "matched_fragments": 1077, "total_fragments": 1133, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Klebsiella variicola", "strain": "strain=type strain: F2R9", "accession": "GCA_900978195.1", "taxid": 244366, "species_taxid": 244366, "relation_to_type": "type", "validated": true, "ani": 84.9603, "matched_fragments": 826, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella variicola", "strain": "strain=F2R9", "accession": "GCA_017638945.1", "taxid": 244366, "species_taxid": 244366, "relation_to_type": "type", "validated": true, "ani": 84.8875, "matched_fragments": 841, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 84.8588, "matched_fragments": 834, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella variicola", "strain": "strain=DSM 15968", "accession": "GCA_000828055.2", "taxid": 244366, "species_taxid": 244366, "relation_to_type": "type", "validated": true, "ani": 84.8267, "matched_fragments": 847, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella grimontii", "strain": "strain=06D021", "accession": "GCA_900200035.1", "taxid": 2058152, "species_taxid": 2058152, "relation_to_type": "type", "validated": true, "ani": 83.2647, "matched_fragments": 809, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pasteurii", "strain": "", "accession": "GCA_902158725.1", "taxid": 2587529, "species_taxid": 2587529, "relation_to_type": "type", "validated": true, "ani": 83.2254, "matched_fragments": 821, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NBRC 105695", "accession": "GCA_001598695.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 83.1504, "matched_fragments": 810, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 80.5492, "matched_fragments": 595, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 80.5046, "matched_fragments": 589, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 80.3138, "matched_fragments": 589, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 80.1988, "matched_fragments": 592, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 37.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000215745.1", "gtdb_species": "s__Klebsiella aerogenes", "ani": 98.6126, "matched_fragments": 1079, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 341, "status": "conclusive" }, { "accession": "GCF_000828055.2", "gtdb_species": "s__Klebsiella variicola", "ani": 84.8512, "matched_fragments": 845, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 528, "status": "-" }, { "accession": "GCF_000742135.1", "gtdb_species": "s__Klebsiella pneumoniae", "ani": 84.8028, "matched_fragments": 840, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.216, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "95.97", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.77", "num_clustered_genomes": 11294, "status": "-" }, { "accession": "GCF_900978845.1", "gtdb_species": "s__Klebsiella africana", "ani": 84.5878, "matched_fragments": 820, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.216, "mean_intra_species_ani": "95.65", "min_intra_species_ani": "95.27", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 27, "status": "-" }, { "accession": "GCF_000751755.1", "gtdb_species": "s__Klebsiella quasipneumoniae", "ani": 84.584, "matched_fragments": 837, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", 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"min_intra_species_ani": "98.97", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 181, "status": "-" }, { "accession": "GCF_902158555.1", "gtdb_species": "s__Klebsiella spallanzanii", "ani": 82.7726, "matched_fragments": 784, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014298075.1", "gtdb_species": "s__Klebsiella sp003752615", "ani": 82.6868, "matched_fragments": 790, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", 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