{ "type": "genome", "identifier": "GCA_934277795.1", "organism": "uncultured Escherichia sp.", "title": "uncultured Escherichia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934277795.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13492960", "wgs_master": "CAKQVQ000000000.1", "refseq_category": "na", "taxid": "237777", "species_taxid": "237777", "organism_name": "uncultured Escherichia sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_F_3_RAJ1020YZ.86", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738662_bin.86", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/277/795/GCA_934277795.1_ERR7738662_bin.86", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Escherichia sp." ], "sample_taxid": [ "237777" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Nepal" ], "sample_host_location_id": [], "data_size": "1.277 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4418640", "Number of Sequences": "192", "Longest Sequences (bp)": "159547", "N50 (bp)": "44761", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.0", "Number of CDSs": "3982", "Average Protein Length": "316.9", "Coding Ratio (%)": "85.7", "Number of rRNAs": "1", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shigella boydii", "strain": "strain=DMB SH130", "accession": "GCA_003572535.1", "taxid": 621, "species_taxid": 621, "relation_to_type": "type", "validated": true, "ani": 98.203, "matched_fragments": 974, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella sonnei", "strain": "strain=ATCC 29930", "accession": "GCA_002950395.1", "taxid": 624, "species_taxid": 624, "relation_to_type": "type", "validated": true, "ani": 98.0817, "matched_fragments": 1240, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella sonnei", "strain": "strain=NCTC12984", "accession": "GCA_900457155.1", "taxid": 624, "species_taxid": 624, "relation_to_type": "type", "validated": true, "ani": 98.0473, "matched_fragments": 1239, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella boydii", "strain": "strain=NCTC12985", "accession": "GCA_900457095.1", "taxid": 621, "species_taxid": 621, "relation_to_type": "type", "validated": true, "ani": 98.0143, "matched_fragments": 1152, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella boydii", "strain": "strain=FDAARGOS_1139", "accession": "GCA_016726285.1", "taxid": 621, "species_taxid": 621, "relation_to_type": "type", "validated": true, "ani": 98.0047, "matched_fragments": 1154, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella flexneri 2a", "strain": "strain=ATCC 29903", "accession": "GCA_002950215.1", "taxid": 42897, "species_taxid": 623, "relation_to_type": "type", "validated": true, "ani": 97.8557, "matched_fragments": 1210, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella dysenteriae", "strain": "strain=NCTC4837", "accession": "GCA_900457215.1", "taxid": 622, "species_taxid": 622, "relation_to_type": "suspected-type", "validated": true, "ani": 97.2471, "matched_fragments": 1123, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Shigella dysenteriae", "strain": "strain=ATCC 13313", "accession": "GCA_002949675.1", "taxid": 622, "species_taxid": 622, "relation_to_type": "suspected-type", "validated": true, "ani": 97.1995, "matched_fragments": 1131, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Escherichia coli", "strain": "strain=DSM 30083", "accession": "GCA_024519395.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 96.9237, "matched_fragments": 1229, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Escherichia coli", "strain": "strain=ATCC 11775", "accession": "GCA_000734955.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 96.8948, "matched_fragments": 1223, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Escherichia coli", "strain": "strain=DSM 30083", "accession": "GCA_000690815.1", "taxid": 562, "species_taxid": 562, "relation_to_type": "neotype", "validated": true, "ani": 96.8911, "matched_fragments": 1241, "total_fragments": 1372, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Escherichia coli", "strain": "strain=ATCC 11775", "accession": "GCA_003697165.2", "taxid": 562, 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