{ "type": "genome", "identifier": "GCA_934293955.1", "organism": "uncultured Anaerostipes sp.", "title": "uncultured Anaerostipes sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934293955.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13509658", "wgs_master": "CAKQZP000000000.1", "refseq_category": "na", "taxid": "512318", "species_taxid": "512318", "organism_name": "uncultured Anaerostipes sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_B_23_THA1066YZ.123", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738265_bin.123", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/293/955/GCA_934293955.1_ERR7738265_bin.123", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Anaerostipes sp." ], "sample_taxid": [ "512318" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Nepal" ], "sample_host_location_id": [], "data_size": "0.797 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.81, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2771709", "Number of Sequences": "473", "Longest Sequences (bp)": "77503", "N50 (bp)": "8925", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.5", "Number of CDSs": "2368", "Average Protein Length": "277.8", "Coding Ratio (%)": "71.2", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaerostipes hadrus", "strain": "strain=DSM 3319", "accession": "GCA_000332875.2", "taxid": 649756, "species_taxid": 649756, "relation_to_type": "type", "validated": true, "ani": 88.4092, "matched_fragments": 399, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes faecalis", "strain": "strain=AGMB03513", "accession": "GCA_018982945.1", "taxid": 2738446, "species_taxid": 2738446, "relation_to_type": "type", "validated": true, "ani": 79.2308, "matched_fragments": 188, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes butyraticus", "strain": "strain=JCM 17466", "accession": "GCA_016586355.1", "taxid": 645466, "species_taxid": 645466, "relation_to_type": "type", "validated": true, "ani": 78.3106, "matched_fragments": 138, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes caccae", "strain": "strain=DSM 14662", "accession": "GCA_025146005.1", "taxid": 105841, "species_taxid": 105841, "relation_to_type": "type", "validated": true, "ani": 77.7885, "matched_fragments": 59, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes caccae", "strain": "strain=JCM 13470", "accession": "GCA_014467075.1", "taxid": 105841, "species_taxid": 105841, "relation_to_type": "type", "validated": true, "ani": 77.7885, "matched_fragments": 59, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerostipes caccae", "strain": "strain=DSM 14662", "accession": "GCA_000154305.1", "taxid": 105841, "species_taxid": 105841, "relation_to_type": "type", "validated": true, "ani": 77.6419, "matched_fragments": 58, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerobutyricum hallii", "strain": "strain=DSM 3353", "accession": "GCA_000173975.1", "taxid": 39488, "species_taxid": 39488, "relation_to_type": "type", "validated": true, "ani": 77.077, "matched_fragments": 57, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_000484655.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6619, "matched_fragments": 51, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 76.6463, "matched_fragments": 60, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_025148125.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 76.634, "matched_fragments": 55, "total_fragments": 664, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.81, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001404655.1", "gtdb_species": "s__Anaerostipes hadrus_A", "ani": 98.4395, "matched_fragments": 456, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_902362875.1", "gtdb_species": "s__Anaerostipes sp900066705", "ani": 91.1255, "matched_fragments": 445, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000332875.2", "gtdb_species": "s__Anaerostipes hadrus", "ani": 88.4092, "matched_fragments": 399, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.65", "num_clustered_genomes": 78, "status": "-" }, { "accession": "GCA_905215045.1", "gtdb_species": "s__Anaerostipes sp905215045", "ani": 87.7766, "matched_fragments": 301, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018918155.1", "gtdb_species": "s__Anaerostipes sp018918155", "ani": 80.2645, "matched_fragments": 223, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001940315.1", "gtdb_species": "s__Anaerostipes sp001940315", "ani": 79.2924, "matched_fragments": 188, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900756035.1", "gtdb_species": "s__Anaerostipes sp900756035", "ani": 78.7612, "matched_fragments": 172, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019119895.1", "gtdb_species": "s__Anaerostipes avistercoris", "ani": 78.3462, "matched_fragments": 146, "total_fragments": 664, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerostipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.181, "cell_length": 0.5, "doubling_h": null, "growth_tmp": 37.75, "optimum_tmp": 39.5, "optimum_ph": 5.75, "genome_size": 3351944.437, "gc_content": 40.613, "coding_genes": 2835.5, "rRNA16S_genes": 9.0, "tRNA_genes": 70.0, "gram_stain": 1.0, "sporulation": 0.333, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Anaerostipes", "s__Anaerostipes amylophilus" ], "_genome_taxon": [ "uncultured", "Anaerostipes", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Anaerostipes", "s__Anaerostipes amylophilus", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Anaerostipes", "Anaerostipes", "amylophilus" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }