{
    "type": "genome",
    "identifier": "GCA_934306035.1",
    "organism": "uncultured Lachnospira sp.",
    "title": "uncultured Lachnospira sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934306035.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13517857",
        "wgs_master": "CAKRBO000000000.1",
        "refseq_category": "na",
        "taxid": "446043",
        "species_taxid": "446043",
        "organism_name": "uncultured Lachnospira sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_F_15_RAU1013YZ.177",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/16",
        "asm_name": "ERR7738472_bin.177",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/306/035/GCA_934306035.1_ERR7738472_bin.177",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-16",
    "dateModified": "2022-04-16",
    "datePublished": "2022-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lachnospira sp."
        ],
        "sample_taxid": [
            "446043"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Nepal"
        ],
        "sample_host_location_id": [],
        "data_size": "0.663 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 82.72,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2335374",
        "Number of Sequences": "165",
        "Longest Sequences (bp)": "81975",
        "N50 (bp)": "23164",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.5",
        "Number of CDSs": "2056",
        "Average Protein Length": "319.2",
        "Coding Ratio (%)": "84.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lachnospira eligens",
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                "accession": "GCA_000146185.1",
                "taxid": 39485,
                "species_taxid": 39485,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.5296,
                "matched_fragments": 616,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnospira multipara",
                "strain": "strain=ATCC 19207",
                "accession": "GCA_000424105.1",
                "taxid": 28051,
                "species_taxid": 28051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1301,
                "matched_fragments": 140,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio crossotus",
                "strain": "strain=DSM 2876",
                "accession": "GCA_025148445.1",
                "taxid": 45851,
                "species_taxid": 45851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5667,
                "matched_fragments": 69,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio proteoclasticus",
                "strain": "strain=B316",
                "accession": "GCA_000145035.1",
                "taxid": 43305,
                "species_taxid": 43305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9194,
                "matched_fragments": 50,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium uniforme",
                "strain": "strain=ATCC 35992",
                "accession": "GCA_900167115.1",
                "taxid": 39495,
                "species_taxid": 39495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5257,
                "matched_fragments": 56,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ventriosum",
                "strain": "strain=ATCC 27560",
                "accession": "GCA_025150745.1",
                "taxid": 39496,
                "species_taxid": 39496,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.4958,
                "matched_fragments": 68,
                "total_fragments": 693,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 82.72,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003458705.1",
                "gtdb_species": "s__Lachnospira sp003537285",
                "ani": 96.6639,
                "matched_fragments": 595,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.4867,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "96.87",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000146185.1",
                "gtdb_species": "s__Lachnospira eligens",
                "ani": 94.5296,
                "matched_fragments": 616,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.6336,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "95.71",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009680455.1",
                "gtdb_species": "s__Lachnospira eligens_A",
                "ani": 93.4616,
                "matched_fragments": 576,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.6336,
                "mean_intra_species_ani": "97.83",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 35,
                "status": "-"
            },
            {
                "accession": "GCF_003464165.1",
                "gtdb_species": "s__Lachnospira sp003451515",
                "ani": 92.8021,
                "matched_fragments": 523,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_900547255.1",
                "gtdb_species": "s__Lachnospira sp900547255",
                "ani": 79.4916,
                "matched_fragments": 216,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.87",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900112995.1",
                "gtdb_species": "s__Lachnospira rogosae_A",
                "ani": 79.2884,
                "matched_fragments": 266,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.51",
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            },
            {
                "accession": "GCA_900772425.1",
                "gtdb_species": "s__Lachnospira sp900772425",
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                "matched_fragments": 127,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002435585.1",
                "gtdb_species": "s__Lachnospira sp002435585",
                "ani": 79.1046,
                "matched_fragments": 180,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000436475.1",
                "gtdb_species": "s__Lachnospira sp000436475",
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                "matched_fragments": 235,
                "total_fragments": 693,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.97",
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                "num_clustered_genomes": 10,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 38.0,
        "optimum_tmp": 38.0,
        "optimum_ph": null,
        "genome_size": 2724871.0,
        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira sp003537285"
    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira sp003537285",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Lachnospira",
        "Lachnospira",
        "sp003537285"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}