{ "type": "genome", "identifier": "GCA_934339355.1", "organism": "uncultured Roseburia sp.", "title": "uncultured Roseburia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934339355.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13512509", "wgs_master": "CAKRHX000000000.1", "refseq_category": "na", "taxid": "512314", "species_taxid": "512314", "organism_name": "uncultured Roseburia sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_C_24_1307.198", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738605_bin.198", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/339/355/GCA_934339355.1_ERR7738605_bin.198", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Roseburia sp." ], "sample_taxid": [ "512314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.976 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3419525", "Number of Sequences": "89", "Longest Sequences (bp)": "192703", "N50 (bp)": "65777", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.0", "Number of CDSs": "3029", "Average Protein Length": "332.7", "Coding Ratio (%)": "88.4", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_900537995.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 90.8494, "matched_fragments": 871, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_000156535.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 90.8025, "matched_fragments": 868, 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"below_threshold" }, { "organism_name": "Roseburia porci", "strain": "strain=MUC/MUC-530-WT-4D", "accession": "GCA_009695765.1", "taxid": 2605790, "species_taxid": 2605790, "relation_to_type": "type", "validated": true, "ani": 77.8382, "matched_fragments": 191, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia faecis", "strain": "strain=M72", "accession": "GCA_001406815.1", "taxid": 301302, "species_taxid": 301302, "relation_to_type": "type", "validated": true, "ani": 77.4601, "matched_fragments": 188, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ramulus", "strain": "strain=ATCC 29099", "accession": "GCA_000469345.1", "taxid": 39490, "species_taxid": 39490, "relation_to_type": "type", "validated": true, "ani": 77.2654, "matched_fragments": 120, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 77.2166, "matched_fragments": 66, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 77.079, "matched_fragments": 84, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 77.0179, "matched_fragments": 80, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 76.9048, "matched_fragments": 83, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia intestinalis", "strain": "strain=27-44", "accession": "GCA_014297355.1", "taxid": 2763028, "species_taxid": 2763028, "relation_to_type": "type", "validated": true, "ani": 76.8552, "matched_fragments": 86, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Murimonas intestini", "strain": "strain=DSM 26524", "accession": "GCA_024622195.1", "taxid": 1337051, "species_taxid": 1337051, "relation_to_type": "type", "validated": true, "ani": 76.6265, "matched_fragments": 50, "total_fragments": 1096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus gauvreauii", "strain": "strain=DSM 19829", "accession": "GCA_000425525.1", "taxid": 438033, "species_taxid": 438033, 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