{
    "type": "genome",
    "identifier": "GCA_934351705.1",
    "organism": "uncultured Lachnospiraceae bacterium",
    "title": "uncultured Lachnospiraceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934351705.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13512433",
        "wgs_master": "CAKRJK000000000.1",
        "refseq_category": "na",
        "taxid": "297314",
        "species_taxid": "297314",
        "organism_name": "uncultured Lachnospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_F_17_1567.30",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7747083_bin.30",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/351/705/GCA_934351705.1_ERR7747083_bin.30",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lachnospiraceae bacterium"
        ],
        "sample_taxid": [
            "297314"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.533 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 77.58,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1841255",
        "Number of Sequences": "370",
        "Longest Sequences (bp)": "25896",
        "N50 (bp)": "6062",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.8",
        "Number of CDSs": "1446",
        "Average Protein Length": "291.0",
        "Coding Ratio (%)": "68.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "18",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Eubacterium ramulus",
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                "accession": "GCA_000469345.1",
                "taxid": 39490,
                "species_taxid": 39490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4763,
                "matched_fragments": 51,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia hominis",
                "strain": "strain=A2-183",
                "accession": "GCA_000225345.1",
                "taxid": 301301,
                "species_taxid": 301301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.99,
                "matched_fragments": 62,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia porci",
                "strain": "strain=MUC/MUC-530-WT-4D",
                "accession": "GCA_009695765.1",
                "taxid": 2605790,
                "species_taxid": 2605790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9757,
                "matched_fragments": 60,
                "total_fragments": 414,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_900537995.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 73,
                "total_fragments": 414,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
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                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9077,
                "matched_fragments": 74,
                "total_fragments": 414,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1 82",
                "accession": "GCA_025151715.1",
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                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.898,
                "matched_fragments": 75,
                "total_fragments": 414,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 77.58,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_003507655.1",
                "gtdb_species": "s__UBA11774 sp003507655",
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                "matched_fragments": 168,
                "total_fragments": 414,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA11774",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_012519695.1",
                "gtdb_species": "s__14-2 sp012519695",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
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                "status": "-"
            },
            {
                "accession": "GCF_014287635.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__1XD42-69",
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                "mean_intra_species_ani": "98.20",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001940225.1",
                "gtdb_species": "s__14-2 sp001940225",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_003470905.1",
                "gtdb_species": "s__Roseburia sp003470905",
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            },
            {
                "accession": "GCA_900771955.1",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Lachnospiraceae",
        "g__UBA11774",
        "s__UBA11774 sp934351705"
    ],
    "_genome_taxon": [
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        "Lachnospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__UBA11774",
        "s__UBA11774 sp934351705",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "UBA11774",
        "UBA11774",
        "sp934351705"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}