{
    "type": "genome",
    "identifier": "GCA_934351885.1",
    "organism": "uncultured Lachnospira sp.",
    "title": "uncultured Lachnospira sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934351885.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13523325",
        "wgs_master": "CAKRJS000000000.1",
        "refseq_category": "na",
        "taxid": "446043",
        "species_taxid": "446043",
        "organism_name": "uncultured Lachnospira sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_K_19_1779.1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/16",
        "asm_name": "ERR7737617_bin.1",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/351/885/GCA_934351885.1_ERR7737617_bin.1",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-16",
    "dateModified": "2022-04-16",
    "datePublished": "2022-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lachnospira sp."
        ],
        "sample_taxid": [
            "446043"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.756 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 73.44,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2658772",
        "Number of Sequences": "427",
        "Longest Sequences (bp)": "54989",
        "N50 (bp)": "9534",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "35.1",
        "Number of CDSs": "1944",
        "Average Protein Length": "314.9",
        "Coding Ratio (%)": "69.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lachnospira eligens",
                "strain": "strain=ATCC 27750",
                "accession": "GCA_000146185.1",
                "taxid": 39485,
                "species_taxid": 39485,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.5519,
                "matched_fragments": 180,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnospira multipara",
                "strain": "strain=ATCC 19207",
                "accession": "GCA_000424105.1",
                "taxid": 28051,
                "species_taxid": 28051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6773,
                "matched_fragments": 91,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ventriosum",
                "strain": "strain=ATCC 27560",
                "accession": "GCA_025150745.1",
                "taxid": 39496,
                "species_taxid": 39496,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1864,
                "matched_fragments": 52,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium uniforme",
                "strain": "strain=ATCC 35992",
                "accession": "GCA_900167115.1",
                "taxid": 39495,
                "species_taxid": 39495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2961,
                "matched_fragments": 54,
                "total_fragments": 657,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 73.44,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_900545725.1",
                "gtdb_species": "s__Lachnospira sp900545725",
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                "matched_fragments": 513,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.45",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900551945.1",
                "gtdb_species": "s__Lachnospira sp900551945",
                "ani": 80.7815,
                "matched_fragments": 355,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900112995.1",
                "gtdb_species": "s__Lachnospira rogosae_A",
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                "matched_fragments": 192,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.05",
                "min_intra_species_ani": "98.51",
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                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCA_002394205.1",
                "gtdb_species": "s__Lachnospira sp002394205",
                "ani": 78.6088,
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                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000146185.1",
                "gtdb_species": "s__Lachnospira eligens",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_009680455.1",
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                "ani": 78.544,
                "matched_fragments": 174,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "97.83",
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                "num_clustered_genomes": 35,
                "status": "-"
            },
            {
                "accession": "GCA_000436475.1",
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                "matched_fragments": 187,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "97.97",
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                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_003464165.1",
                "gtdb_species": "s__Lachnospira sp003451515",
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                "matched_fragments": 157,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.44",
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                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_000436535.1",
                "gtdb_species": "s__Lachnospira sp000436535",
                "ani": 78.2455,
                "matched_fragments": 170,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "98.91",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003458705.1",
                "gtdb_species": "s__Lachnospira sp003537285",
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                "matched_fragments": 163,
                "total_fragments": 657,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "98.01",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_017397445.1",
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                "matched_fragments": 87,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_000437735.1",
                "gtdb_species": "s__Lachnospira sp000437735",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_002435585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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            {
                "accession": "GCA_017626275.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_900552795.1",
                "gtdb_species": "s__Lachnospira sp900552795",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
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        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira sp900545725"
    ],
    "_genome_taxon": [
        "uncultured",
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        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Lachnospira",
        "s__Lachnospira sp900545725",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Lachnospira",
        "Lachnospira",
        "sp900545725"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
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        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}