{
    "type": "genome",
    "identifier": "GCA_934351995.1",
    "organism": "uncultured Butyrivibrio sp.",
    "title": "uncultured Butyrivibrio sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934351995.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13504151",
        "wgs_master": "CAKRJV000000000.1",
        "refseq_category": "na",
        "taxid": "370801",
        "species_taxid": "370801",
        "organism_name": "uncultured Butyrivibrio sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_B_9_CHE0002SZ.158",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7738938_bin.158",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/351/995/GCA_934351995.1_ERR7738938_bin.158",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Plasmodium falciparum"
        ],
        "sample_taxid": [
            "5833"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.597 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2076725",
        "Number of Sequences": "134",
        "Longest Sequences (bp)": "115519",
        "N50 (bp)": "24517",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.0",
        "Number of CDSs": "1827",
        "Average Protein Length": "330.0",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Butyrivibrio crossotus",
                "strain": "strain=DSM 2876",
                "accession": "GCA_000156015.1",
                "taxid": 45851,
                "species_taxid": 45851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0651,
                "matched_fragments": 114,
                "total_fragments": 627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio crossotus",
                "strain": "strain=DSM 2876",
                "accession": "GCA_025148445.1",
                "taxid": 45851,
                "species_taxid": 45851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9526,
                "matched_fragments": 117,
                "total_fragments": 627,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000431815.1",
                "gtdb_species": "s__Butyrivibrio_A sp000431815",
                "ani": 98.1298,
                "matched_fragments": 576,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.85",
                "min_intra_species_ani": "98.85",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000155855.1",
                "gtdb_species": "s__Bacteroides_F pectinophilus",
                "ani": 78.2192,
                "matched_fragments": 56,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Bacteroides_F",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000156015.1",
                "gtdb_species": "s__Butyrivibrio_A crossotus",
                "ani": 78.0651,
                "matched_fragments": 114,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "97.83",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.60",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_900771195.1",
                "gtdb_species": "s__Butyrivibrio_A sp900771195",
                "ani": 77.7858,
                "matched_fragments": 98,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016297265.1",
                "gtdb_species": "s__Butyrivibrio_A sp016297265",
                "ani": 77.4052,
                "matched_fragments": 81,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900768755.1",
                "gtdb_species": "s__Butyrivibrio_A sp900768755",
                "ani": 77.345,
                "matched_fragments": 91,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910577605.1",
                "gtdb_species": "s__Butyrivibrio_A sp910577605",
                "ani": 76.5645,
                "matched_fragments": 75,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900545175.1",
                "gtdb_species": "s__CAG-882 sp900545175",
                "ani": 76.5288,
                "matched_fragments": 58,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-882",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "98.05",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000435595.1",
                "gtdb_species": "s__CAG-882 sp000435595",
                "ani": 76.4888,
                "matched_fragments": 57,
                "total_fragments": 627,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-882",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 37.333,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3416203.151,
        "gc_content": 39.197,
        "coding_genes": 2950.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.666,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Butyrivibrio_A",
        "s__Butyrivibrio_A sp000431815"
    ],
    "_genome_taxon": [
        "uncultured",
        "Butyrivibrio",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Butyrivibrio_A",
        "s__Butyrivibrio_A sp000431815",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Butyrivibrio",
        "A",
        "Butyrivibrio",
        "A",
        "sp000431815"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}