{
    "type": "genome",
    "identifier": "GCA_934359225.1",
    "organism": "uncultured Lachnospiraceae bacterium",
    "title": "uncultured Lachnospiraceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934359225.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13479819",
        "wgs_master": "CAKRLF000000000.1",
        "refseq_category": "na",
        "taxid": "297314",
        "species_taxid": "297314",
        "organism_name": "uncultured Lachnospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_F_4_1629.114",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/16",
        "asm_name": "ERR7745903_bin.114",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/359/225/GCA_934359225.1_ERR7745903_bin.114",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-16",
    "dateModified": "2022-04-16",
    "datePublished": "2022-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lachnospiraceae bacterium"
        ],
        "sample_taxid": [
            "297314"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.978 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3440230",
        "Number of Sequences": "50",
        "Longest Sequences (bp)": "298975",
        "N50 (bp)": "121812",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.4",
        "Number of CDSs": "3090",
        "Average Protein Length": "335.1",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6423,
                "matched_fragments": 112,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1 82",
                "accession": "GCA_025151715.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6064,
                "matched_fragments": 113,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_900537995.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.5713,
                "matched_fragments": 111,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicatena faecalis",
                "strain": "strain=AGMB00832",
                "accession": "GCA_012524165.2",
                "taxid": 2726362,
                "species_taxid": 2726362,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.267,
                "matched_fragments": 50,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnospira eligens",
                "strain": "strain=ATCC 27750",
                "accession": "GCA_000146185.1",
                "taxid": 39485,
                "species_taxid": 39485,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.2508,
                "matched_fragments": 65,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jingyaoa shaoxingensis",
                "strain": "strain=NSJ-46",
                "accession": "GCA_014385005.1",
                "taxid": 2763671,
                "species_taxid": 2763671,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1098,
                "matched_fragments": 89,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eisenbergiella porci",
                "strain": "strain=WCA-389-WT-23B",
                "accession": "GCA_009696275.1",
                "taxid": 2652274,
                "species_taxid": 2652274,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0142,
                "matched_fragments": 66,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia hansenii",
                "strain": "strain=DSM 20583",
                "accession": "GCA_025147655.1",
                "taxid": 1322,
                "species_taxid": 1322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9733,
                "matched_fragments": 53,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia hansenii",
                "strain": "strain=DSM 20583",
                "accession": "GCA_000156675.1",
                "taxid": 1322,
                "species_taxid": 1322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9667,
                "matched_fragments": 53,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ramulus",
                "strain": "strain=ATCC 29099",
                "accession": "GCA_000469345.1",
                "taxid": 39490,
                "species_taxid": 39490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9147,
                "matched_fragments": 73,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio fibrisolvens",
                "strain": "strain=DSM 3071",
                "accession": "GCA_900129945.1",
                "taxid": 831,
                "species_taxid": 831,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9076,
                "matched_fragments": 57,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eisenbergiella tayi",
                "strain": "strain=DSM 26961",
                "accession": "GCA_001881565.1",
                "taxid": 1432052,
                "species_taxid": 1432052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8911,
                "matched_fragments": 71,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Murimonas intestini",
                "strain": "strain=DSM 26524",
                "accession": "GCA_024622195.1",
                "taxid": 1337051,
                "species_taxid": 1337051,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8868,
                "matched_fragments": 50,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia hansenii",
                "strain": "strain=DSM 20583",
                "accession": "GCA_002222595.2",
                "taxid": 1322,
                "species_taxid": 1322,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8725,
                "matched_fragments": 52,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Blautia argi",
                "strain": "strain=KCTC 15426",
                "accession": "GCA_003287895.1",
                "taxid": 1912897,
                "species_taxid": 1912897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.87,
                "matched_fragments": 51,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus comes",
                "strain": "strain=ATCC 27758",
                "accession": "GCA_025149785.1",
                "taxid": 410072,
                "species_taxid": 410072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8486,
                "matched_fragments": 77,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineothrix alysoides",
                "strain": "strain=KNHs209",
                "accession": "GCA_000732725.1",
                "taxid": 1469948,
                "species_taxid": 1469948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4158,
                "matched_fragments": 65,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kineothrix alysoides",
                "strain": "strain=DSM 100556",
                "accession": "GCA_004345255.1",
                "taxid": 1469948,
                "species_taxid": 1469948,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4122,
                "matched_fragments": 63,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio hungatei",
                "strain": "strain=DSM 14810",
                "accession": "GCA_900143205.1",
                "taxid": 185008,
                "species_taxid": 185008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2484,
                "matched_fragments": 66,
                "total_fragments": 1118,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001916965.1",
                "gtdb_species": "s__COE1 sp001916965",
                "ani": 98.1552,
                "matched_fragments": 953,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900753305.1",
                "gtdb_species": "s__COE1 sp900753305",
                "ani": 84.9168,
                "matched_fragments": 712,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003490145.1",
                "gtdb_species": "s__CAG-95 sp900066375",
                "ani": 78.9123,
                "matched_fragments": 158,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017436865.1",
                "gtdb_species": "s__COE1 sp017436865",
                "ani": 78.07,
                "matched_fragments": 223,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017467805.1",
                "gtdb_species": "s__COE1 sp017467805",
                "ani": 77.9482,
                "matched_fragments": 197,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015056925.1",
                "gtdb_species": "s__COE1 sp015056925",
                "ani": 77.9348,
                "matched_fragments": 201,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017440575.1",
                "gtdb_species": "s__COE1 sp017440575",
                "ani": 77.7822,
                "matched_fragments": 217,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017411305.1",
                "gtdb_species": "s__CAG-95 sp017411305",
                "ani": 77.7127,
                "matched_fragments": 78,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017391545.1",
                "gtdb_species": "s__COE1 sp017391545",
                "ani": 77.6121,
                "matched_fragments": 107,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017424235.1",
                "gtdb_species": "s__COE1 sp017424235",
                "ani": 77.5467,
                "matched_fragments": 157,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910577115.1",
                "gtdb_species": "s__COE1 sp910577115",
                "ani": 77.182,
                "matched_fragments": 115,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014804345.1",
                "gtdb_species": "s__COE1 sp014804345",
                "ani": 77.1639,
                "matched_fragments": 56,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002490665.1",
                "gtdb_species": "s__COE1 sp002490665",
                "ani": 77.0741,
                "matched_fragments": 101,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.75",
                "min_intra_species_ani": "95.74",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_902763335.1",
                "gtdb_species": "s__UBA2821 sp902763335",
                "ani": 76.9857,
                "matched_fragments": 55,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA2821",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017621815.1",
                "gtdb_species": "s__CAG-95 sp017621815",
                "ani": 76.8974,
                "matched_fragments": 88,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017623295.1",
                "gtdb_species": "s__UBA3282 sp017623295",
                "ani": 76.8076,
                "matched_fragments": 109,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA3282",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017440375.1",
                "gtdb_species": "s__UBA3282 sp017440375",
                "ani": 76.3267,
                "matched_fragments": 69,
                "total_fragments": 1118,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA3282",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.239,
        "cell_length": 0.277,
        "doubling_h": 0.394,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.16,
        "optimum_ph": 6.363,
        "genome_size": 3641163.5,
        "gc_content": 42.852,
        "coding_genes": 3283.347,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.727,
        "gram_stain": 0.885,
        "sporulation": 0.414,
        "motility": 0.448,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.988,
        "aerobic_respiration": 0.011,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.133,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.033,
        "vibrio_cell_shape": 0.033,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__COE1",
        "s__COE1 sp001916965"
    ],
    "_genome_taxon": [
        "uncultured",
        "Lachnospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__COE1",
        "s__COE1 sp001916965",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "COE1",
        "COE1",
        "sp001916965"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}