{
    "type": "genome",
    "identifier": "GCA_934385825.1",
    "organism": "uncultured Bacteroidales bacterium",
    "title": "uncultured Bacteroidales bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934385825.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13507309",
        "wgs_master": "CAKRPX000000000.1",
        "refseq_category": "na",
        "taxid": "194843",
        "species_taxid": "194843",
        "organism_name": "uncultured Bacteroidales bacterium",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber_C_4_7003.137",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/16",
        "asm_name": "ERR7738546_bin.137",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/385/825/GCA_934385825.1_ERR7738546_bin.137",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-16",
    "dateModified": "2022-04-16",
    "datePublished": "2022-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Bacteroidales bacterium"
        ],
        "sample_taxid": [
            "194843"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.729 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2559746",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "522757",
        "N50 (bp)": "209740",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.7",
        "Number of CDSs": "2070",
        "Average Protein Length": "366.3",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Barnesiella viscericola",
                "strain": "strain=C46, DSM 18177",
                "accession": "GCA_000512915.1",
                "taxid": 397865,
                "species_taxid": 397865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0457,
                "matched_fragments": 83,
                "total_fragments": 844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacter fastidiosus",
                "strain": "strain=NSB1",
                "accession": "GCA_000473955.1",
                "taxid": 1099853,
                "species_taxid": 1099853,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7607,
                "matched_fragments": 71,
                "total_fragments": 844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacter fastidiosus",
                "strain": "strain=NSB1",
                "accession": "GCA_003634345.1",
                "taxid": 1099853,
                "species_taxid": 1099853,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7258,
                "matched_fragments": 73,
                "total_fragments": 844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprobacter secundus subsp. similis",
                "strain": "strain=2CBH44",
                "accession": "GCA_015097275.1",
                "taxid": 2751153,
                "species_taxid": 1501392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5463,
                "matched_fragments": 53,
                "total_fragments": 844,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Barnesiella intestinihominis",
                "strain": "strain=YIT 11860",
                "accession": "GCA_000296465.1",
                "taxid": 487174,
                "species_taxid": 487174,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2266,
                "matched_fragments": 81,
                "total_fragments": 844,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000434215.1",
                "gtdb_species": "s__UBA11471 sp000434215",
                "ani": 99.8672,
                "matched_fragments": 761,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA11471;g__UBA11471",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "98.64",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900547555.1",
                "gtdb_species": "s__UBA11471 sp900547555",
                "ani": 92.1918,
                "matched_fragments": 708,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA11471;g__UBA11471",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "98.22",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900542765.1",
                "gtdb_species": "s__UBA11471 sp900542765",
                "ani": 79.6537,
                "matched_fragments": 418,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA11471;g__UBA11471",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "98.30",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905210875.1",
                "gtdb_species": "s__UBA11471 sp905210875",
                "ani": 79.1445,
                "matched_fragments": 319,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA11471;g__UBA11471",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000512915.1",
                "gtdb_species": "s__Barnesiella viscericola",
                "ani": 78.0457,
                "matched_fragments": 83,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.37",
                "min_intra_species_ani": "97.37",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017462265.1",
                "gtdb_species": "s__UBA11471 sp017462265",
                "ani": 78.0374,
                "matched_fragments": 182,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA11471;g__UBA11471",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019114445.1",
                "gtdb_species": "s__Barnesiella excrementigallinarum",
                "ani": 77.1335,
                "matched_fragments": 78,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003634345.1",
                "gtdb_species": "s__Coprobacter fastidiosus",
                "ani": 76.7258,
                "matched_fragments": 73,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Coprobacteraceae;g__Coprobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.59",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_900545915.1",
                "gtdb_species": "s__Coprobacter sp900545915",
                "ani": 76.3928,
                "matched_fragments": 61,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Coprobacteraceae;g__Coprobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.49",
                "min_intra_species_ani": "96.20",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000296465.1",
                "gtdb_species": "s__Barnesiella intestinihominis",
                "ani": 76.2467,
                "matched_fragments": 80,
                "total_fragments": 844,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 27,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.217,
        "cell_length": 0.157,
        "doubling_h": 0.206,
        "growth_tmp": 36.585,
        "optimum_tmp": 36.041,
        "optimum_ph": 7.086,
        "genome_size": 3658719.825,
        "gc_content": 44.947,
        "coding_genes": 3043.648,
        "rRNA16S_genes": 4.032,
        "tRNA_genes": 57.661,
        "gram_stain": 0.014,
        "sporulation": 0.0,
        "motility": 0.04,
        "range_salinity": 0.0,
        "facultative_respiration": 0.006,
        "anaerobic_respiration": 0.958,
        "aerobic_respiration": 0.034,
        "mesophilic_range_tmp": 0.985,
        "thermophilic_range_tmp": 0.014,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.024,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.024,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA11471",
        "g__Caccoplasma",
        "s__Caccoplasma intestinavium"
    ],
    "_genome_taxon": [
        "uncultured",
        "Bacteroidales",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__UBA11471",
        "g__Caccoplasma",
        "s__Caccoplasma intestinavium",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "UBA11471",
        "Caccoplasma",
        "Caccoplasma",
        "intestinavium"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}