{ "type": "genome", "identifier": "GCA_934401765.1", "organism": "uncultured Blautia sp.", "title": "uncultured Blautia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934401765.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13485256", "wgs_master": "CAKRTF000000000.1", "refseq_category": "na", "taxid": "765821", "species_taxid": "765821", "organism_name": "uncultured Blautia sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_A_18_1651.191", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738606_bin.191", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/401/765/GCA_934401765.1_ERR7738606_bin.191", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Blautia sp." ], "sample_taxid": [ "765821" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.806 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2821233", "Number of Sequences": "78", "Longest Sequences (bp)": "201901", "N50 (bp)": "66408", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.0", "Number of CDSs": "2415", "Average Protein Length": "343.1", "Coding Ratio (%)": "88.1", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blautia intestinalis", "strain": "strain=27-44", "accession": "GCA_014297355.1", "taxid": 2763028, "species_taxid": 2763028, "relation_to_type": "type", "validated": true, "ani": 92.9055, "matched_fragments": 731, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_000153905.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 83.0936, "matched_fragments": 551, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 83.0282, "matched_fragments": 570, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia luti", "strain": "strain=DSM 14534", "accession": "GCA_009707925.1", "taxid": 89014, "species_taxid": 89014, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9438, "matched_fragments": 258, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, "species_taxid": 1796615, "relation_to_type": "type", "validated": true, "ani": 78.821, "matched_fragments": 264, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_000484655.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7392, "matched_fragments": 271, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 78.3432, "matched_fragments": 260, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 2885351, "relation_to_type": "type", "validated": true, "ani": 76.9545, "matched_fragments": 114, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6033, "matched_fragments": 68, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 76.4704, "matched_fragments": 75, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4626, "matched_fragments": 68, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter massiliensis", "strain": "strain=Marseille-P2086", "accession": "GCA_001487105.1", "taxid": 1720300, "species_taxid": 1720300, "relation_to_type": "type", "validated": true, "ani": 75.9423, "matched_fragments": 54, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia porci", "strain": "strain=MUC/MUC-530-WT-4D", "accession": "GCA_009695765.1", "taxid": 2605790, "species_taxid": 2605790, "relation_to_type": "type", "validated": true, "ani": 75.6649, "matched_fragments": 75, "total_fragments": 900, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900120195.1", "gtdb_species": "s__Blautia_A sp900120195", "ani": 95.7115, "matched_fragments": 766, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_900066355.1", "gtdb_species": "s__Blautia_A sp900066355", "ani": 93.9202, "matched_fragments": 729, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000210015.1", "gtdb_species": "s__Blautia_A obeum_B", "ani": 92.9138, "matched_fragments": 716, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000153905.1", "gtdb_species": "s__Blautia_A obeum", "ani": 83.0817, "matched_fragments": 552, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "97.20", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.75", "num_clustered_genomes": 45, "status": "-" }, { "accession": "GCF_018918125.1", "gtdb_species": "s__Blautia_A sp018918125", "ani": 83.0067, "matched_fragments": 552, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"accession": "GCA_900551715.1", "gtdb_species": "s__Blautia_A sp900551715", "ani": 80.2372, "matched_fragments": 365, "total_fragments": 900, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.135, "cell_length": 0.052, "doubling_h": 0.255, "growth_tmp": 37.0, "optimum_tmp": 37.775, "optimum_ph": 6.575, "genome_size": 4267441.615, "gc_content": 41.729, "coding_genes": 2948.5, "rRNA16S_genes": 5.0, "tRNA_genes": 65.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, 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