{ "type": "genome", "identifier": "GCA_934463205.1", "organism": "uncultured Clostridia bacterium", "title": "uncultured Clostridia bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934463205.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13488166", "wgs_master": "CAKSJA000000000.1", "refseq_category": "na", "taxid": "244328", "species_taxid": "244328", "organism_name": "uncultured Clostridia bacterium", "infraspecific_name": "", "isolate": "REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber-Hadza-Nepal_C_23_7024.127", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7738514_bin.127", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/463/205/GCA_934463205.1_ERR7738514_bin.127", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Clostridia bacterium" ], "sample_taxid": [ "244328" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.642 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2259643", "Number of Sequences": "219", "Longest Sequences (bp)": "48726", "N50 (bp)": "14253", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.3", "Number of CDSs": "1923", "Average Protein Length": "325.1", "Coding Ratio (%)": "83.0", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003460745.1", "gtdb_species": "s__CAG-41 sp900066215", "ani": 98.0093, "matched_fragments": 574, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.67", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.77", "num_clustered_genomes": 17, "status": "conclusive" }, { "accession": "GCA_910585485.1", "gtdb_species": "s__CAG-41 sp910585485", "ani": 78.4752, "matched_fragments": 202, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_010206265.1", "gtdb_species": "s__CAG-41 sp010206265", "ani": 78.3853, "matched_fragments": 225, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_910579415.1", "gtdb_species": "s__CAG-41 sp910579415", "ani": 78.1874, "matched_fragments": 190, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001941225.1", "gtdb_species": "s__CAG-41 sp001941225", "ani": 78.0828, "matched_fragments": 212, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910585795.1", "gtdb_species": "s__CAG-41 sp910585795", "ani": 77.9381, "matched_fragments": 154, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900556575.1", "gtdb_species": "s__UBA4716 sp900556575", "ani": 77.8321, "matched_fragments": 64, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__UBA4716", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905199755.1", "gtdb_species": "s__UBA4716 sp905199755", "ani": 77.6583, "matched_fragments": 96, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__UBA4716", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017406485.1", "gtdb_species": "s__CAG-41 sp017406485", "ani": 76.9791, "matched_fragments": 77, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002438865.1", "gtdb_species": "s__UBA4716 sp002438865", "ani": 76.8294, "matched_fragments": 75, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__UBA4716", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017443895.1", "gtdb_species": "s__12844 sp017443895", "ani": 76.5285, "matched_fragments": 95, "total_fragments": 639, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__12844", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__UBA1381", "f__UBA1381", "g__Hominilimicola", "s__Hominilimicola fabiformis" ], "_genome_taxon": [ "uncultured", "Clostridia", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__UBA1381", "f__UBA1381", "g__Hominilimicola", "s__Hominilimicola fabiformis", "Bacteria", "Bacillota", "A", "Clostridia", "UBA1381", "UBA1381", "Hominilimicola", "Hominilimicola", "fabiformis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }