{ "tc_result": [ { "organism_name": "Ruminococcus flavefaciens", "strain": "strain=ATCC 19208", "accession": "GCA_000518765.1", "taxid": 1265, "species_taxid": 1265, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1513, "matched_fragments": 596, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus albus", "strain": "strain=7", "accession": "GCA_000179635.2", "taxid": 1264, "species_taxid": 1264, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5142, "matched_fragments": 101, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus albus", "strain": "strain=DSM 20455", "accession": "GCA_000621285.1", "taxid": 1264, "species_taxid": 1264, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4853, "matched_fragments": 102, "total_fragments": 1114, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900119075.1", "gtdb_species": "s__Ruminococcus flavefaciens_Q", "ani": 96.3179, "matched_fragments": 901, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.02", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000621845.1", "gtdb_species": "s__Ruminococcus flavefaciens_E", "ani": 94.1591, "matched_fragments": 872, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000526795.1", "gtdb_species": "s__Ruminococcus flavefaciens_D", "ani": 86.6324, "matched_fragments": 815, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004554385.1", "gtdb_species": "s__Ruminococcus flavefaciens_T", "ani": 85.209, "matched_fragments": 616, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900143025.1", "gtdb_species": "s__Ruminococcus flavefaciens_I", "ani": 82.6085, "matched_fragments": 616, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017519415.1", "gtdb_species": "s__Ruminococcus sp017519415", "ani": 82.4724, "matched_fragments": 402, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900108555.1", "gtdb_species": "s__Ruminococcus flavefaciens_P", "ani": 82.033, "matched_fragments": 614, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902780115.1", "gtdb_species": "s__Ruminococcus flavefaciens_Y", "ani": 82.032, "matched_fragments": 363, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016283395.1", "gtdb_species": "s__Ruminococcus sp016283395", "ani": 82.011, "matched_fragments": 564, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116855.1", "gtdb_species": "s__Ruminococcus flavefaciens_R", "ani": 81.6929, "matched_fragments": 584, "total_fragments": 1114, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.76", "num_clustered_genomes": 13, "status": "-" } ] }