{ "type": "genome", "identifier": "GCA_934527415.1", "organism": "uncultured Bilophila sp.", "title": "uncultured Bilophila sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934527415.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13496636", "wgs_master": "CAKTAP000000000.1", "refseq_category": "na", "taxid": "529385", "species_taxid": "529385", "organism_name": "uncultured Bilophila sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_O_1_1802.20", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7738140_bin.20", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/527/415/GCA_934527415.1_ERR7738140_bin.20", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bilophila sp." ], "sample_taxid": [ "529385" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.621 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 74.62, "contamination": 0.93, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2124450", "Number of Sequences": "750", "Longest Sequences (bp)": "13377", "N50 (bp)": "2980", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "1308", "Average Protein Length": "257.1", "Coding Ratio (%)": "47.5", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bilophila wadsworthia", "strain": "strain=ATCC 49260", "accession": "GCA_000701705.1", "taxid": 35833, "species_taxid": 35833, "relation_to_type": "type", "validated": true, "ani": 98.7684, "matched_fragments": 260, "total_fragments": 271, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 78.1253, "matched_fragments": 50, "total_fragments": 271, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio oxamicus", "strain": "strain=NCIMB 9442", "accession": "GCA_015731765.1", "taxid": 32016, "species_taxid": 32016, "relation_to_type": "type", "validated": true, "ani": 77.813, "matched_fragments": 51, "total_fragments": 271, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 74.62, "contamination": 0.93, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_000701705.1", "gtdb_species": "s__Bilophila wadsworthia", "ani": 98.7684, "matched_fragments": 260, "total_fragments": 271, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.41", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_900550745.1", "gtdb_species": "s__Bilophila sp900550745", "ani": 91.3585, "matched_fragments": 170, "total_fragments": 271, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.71", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900553145.1", "gtdb_species": "s__Bilophila sp900553145", "ani": 90.1165, "matched_fragments": 218, "total_fragments": 271, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902373525.1", "gtdb_species": "s__Bilophila sp902373525", "ani": 84.6711, "matched_fragments": 204, "total_fragments": 271, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019114025.1", "gtdb_species": "s__Bilophila faecipullorum", "ani": 82.1215, "matched_fragments": 142, "total_fragments": 271, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Bilophila", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.64", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.70", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 35.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 4510768.0, "gc_content": 58.52, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfovibrionia", "o__Desulfovibrionales", "f__Desulfovibrionaceae", "g__Bilophila", "s__Bilophila wadsworthia" ], "_genome_taxon": [ "uncultured", "Bilophila", "sp.", "d__Bacteria", "p__Desulfobacterota", "c__Desulfovibrionia", "o__Desulfovibrionales", "f__Desulfovibrionaceae", "g__Bilophila", "s__Bilophila wadsworthia", "Bacteria", "Desulfobacterota", "Desulfovibrionia", "Desulfovibrionales", "Desulfovibrionaceae", "Bilophila", "Bilophila", "wadsworthia" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }