{ "type": "genome", "identifier": "GCA_934533075.1", "organism": "uncultured Paracoccus sp.", "title": "uncultured Paracoccus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934533075.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13507614", "wgs_master": "CAKTBJ000000000.1", "refseq_category": "na", "taxid": "189685", "species_taxid": "189685", "organism_name": "uncultured Paracoccus sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_J_17_RAJ1013YZ.129", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738460_bin.129", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/533/075/GCA_934533075.1_ERR7738460_bin.129", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Paracoccus sp." ], "sample_taxid": [ "189685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Nepal" ], "sample_host_location_id": [], "data_size": "0.737 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2718614", "Number of Sequences": "66", "Longest Sequences (bp)": "221925", "N50 (bp)": "59348", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "2526", "Average Protein Length": "315.8", "Coding Ratio (%)": "88.0", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 80.6137, "matched_fragments": 437, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_003633525.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 80.5224, "matched_fragments": 452, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus pantotrophus", "strain": "strain=DSM 2944", "accession": "GCA_008824185.1", "taxid": 82367, "species_taxid": 82367, "relation_to_type": "type", "validated": true, "ani": 80.5221, "matched_fragments": 456, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=M26", "accession": "GCA_003709565.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 80.4342, "matched_fragments": 473, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus siganidrum", "strain": "strain=DSM 26381", "accession": "GCA_003594835.1", "taxid": 1276757, "species_taxid": 1276757, "relation_to_type": "type", "validated": true, "ani": 80.3445, "matched_fragments": 451, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus denitrificans", "strain": "strain=NBRC 102528", "accession": "GCA_007989485.1", "taxid": 266, "species_taxid": 266, "relation_to_type": "type", "validated": true, "ani": 80.2605, "matched_fragments": 452, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus versutus", "strain": "strain=DSM 582", "accession": "GCA_003387045.1", "taxid": 34007, "species_taxid": 34007, "relation_to_type": "type", "validated": true, "ani": 80.2248, "matched_fragments": 500, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus versutus", "strain": "strain=DSM 582", "accession": "GCA_000763885.1", "taxid": 34007, "species_taxid": 34007, "relation_to_type": "type", "validated": true, "ani": 80.2171, "matched_fragments": 483, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 79.6763, "matched_fragments": 386, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 79.5858, "matched_fragments": 383, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus fontiphilus", "strain": "strain=MVW-1", "accession": "GCA_017356265.1", "taxid": 1815556, "species_taxid": 1815556, "relation_to_type": "type", "validated": true, "ani": 79.4731, "matched_fragments": 353, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus endophyticus", "strain": "strain=SYSUP0003", "accession": "GCA_003286075.1", "taxid": 2233774, "species_taxid": 2233774, "relation_to_type": "type", "validated": true, "ani": 79.4332, "matched_fragments": 360, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salsus", "strain": "strain=EGI L200073", "accession": "GCA_021556615.1", "taxid": 2911061, "species_taxid": 2911061, "relation_to_type": "type", "validated": true, "ani": 78.4748, "matched_fragments": 302, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus nototheniae", "strain": "strain=I-41R45", "accession": "GCA_004335005.1", "taxid": 2489002, "species_taxid": 2489002, "relation_to_type": "type", "validated": true, "ani": 78.3884, "matched_fragments": 381, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus tegillarcae", "strain": "strain=BM15", "accession": "GCA_002847305.1", "taxid": 1529068, "species_taxid": 1529068, "relation_to_type": "type", "validated": true, "ani": 77.667, "matched_fragments": 287, "total_fragments": 873, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016446475.1", "gtdb_species": "s__Paracoccus binzhouensis", "ani": 80.6186, "matched_fragments": 434, "total_fragments": 873, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008824185.1", "gtdb_species": "s__Paracoccus pantotrophus", "ani": 80.552, "matched_fragments": 454, "total_fragments": 873, "gtdb_taxonomy": 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