{
    "type": "genome",
    "identifier": "GCA_934613505.1",
    "organism": "uncultured Oscillospiraceae bacterium",
    "title": "uncultured Oscillospiraceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934613505.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13494349",
        "wgs_master": "CAKTTB000000000.1",
        "refseq_category": "na",
        "taxid": "707003",
        "species_taxid": "707003",
        "organism_name": "uncultured Oscillospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_F_1_RAJ0018YZ.167",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7739005_bin.167",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/613/505/GCA_934613505.1_ERR7739005_bin.167",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Oscillospiraceae bacterium"
        ],
        "sample_taxid": [
            "707003"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Nepal"
        ],
        "sample_host_location_id": [],
        "data_size": "0.485 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 40.28,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1715157",
        "Number of Sequences": "21",
        "Longest Sequences (bp)": "206959",
        "N50 (bp)": "124556",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.1",
        "Number of CDSs": "1667",
        "Average Protein Length": "308.0",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Vescimonas coprocola",
                "strain": "strain=MM50",
                "accession": "GCA_018408575.1",
                "taxid": 2714355,
                "species_taxid": 2714355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3749,
                "matched_fragments": 61,
                "total_fragments": 562,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 40.28,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002404795.1",
                "gtdb_species": "s__CAG-170 sp002404795",
                "ani": 84.9035,
                "matched_fragments": 318,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.77",
                "min_intra_species_ani": "95.28",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_000432135.1",
                "gtdb_species": "s__CAG-170 sp000432135",
                "ani": 84.2007,
                "matched_fragments": 325,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900751035.1",
                "gtdb_species": "s__CAG-170 sp900751035",
                "ani": 83.5065,
                "matched_fragments": 246,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902796245.1",
                "gtdb_species": "s__CAG-170 sp902796245",
                "ani": 83.1423,
                "matched_fragments": 274,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900545925.1",
                "gtdb_species": "s__CAG-170 sp900545925",
                "ani": 83.0683,
                "matched_fragments": 335,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.64",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900548625.1",
                "gtdb_species": "s__CAG-170 sp900548625",
                "ani": 80.0473,
                "matched_fragments": 219,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900549635.1",
                "gtdb_species": "s__CAG-170 sp900549635",
                "ani": 79.8981,
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                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.02",
                "min_intra_species_ani": "95.99",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002437575.1",
                "gtdb_species": "s__CAG-170 sp002437575",
                "ani": 79.8704,
                "matched_fragments": 182,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902803075.1",
                "gtdb_species": "s__CAG-170 sp902803075",
                "ani": 79.3123,
                "matched_fragments": 152,
                "total_fragments": 562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Oscillospiraceae;g__CAG-170",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.397,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 6.25,
        "genome_size": 4470621.5,
        "gc_content": 49.895,
        "coding_genes": 4347.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 61.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__CAG-170",
        "s__CAG-170 sp934613505"
    ],
    "_genome_taxon": [
        "uncultured",
        "Oscillospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Oscillospiraceae",
        "g__CAG-170",
        "s__CAG-170 sp934613505",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Oscillospiraceae",
        "CAG-170",
        "CAG-170",
        "sp934613505"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}