{ "type": "genome", "identifier": "GCA_934643285.1", "organism": "uncultured Ellagibacter sp.", "title": "uncultured Ellagibacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934643285.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13489004", "wgs_master": "CAKUBT000000000.1", "refseq_category": "na", "taxid": "2137580", "species_taxid": "2137580", "organism_name": "uncultured Ellagibacter sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_A_2_1112.453", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/15", "asm_name": "ERR7746411_bin.453", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/643/285/GCA_934643285.1_ERR7746411_bin.453", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-15", "dateModified": "2022-04-15", "datePublished": "2022-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Ellagibacter sp." ], "sample_taxid": [ "2137580" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.630 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2222138", "Number of Sequences": "53", "Longest Sequences (bp)": "332089", "N50 (bp)": "101582", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.0", "Number of CDSs": "1856", "Average Protein Length": "337.0", "Coding Ratio (%)": "84.4", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Senegalimassilia anaerobia", "strain": "strain=type strain: JC110", "accession": "GCA_000236865.1", "taxid": 1473216, "species_taxid": 1473216, "relation_to_type": "type", "validated": true, "ani": 79.7094, "matched_fragments": 269, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213", "accession": "GCA_003788975.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 79.0985, "matched_fragments": 273, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213T", "accession": "GCA_900199375.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 79.0355, "matched_fragments": 281, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella guodeyinii", "strain": "strain=HF-1101", "accession": "GCA_009834925.2", "taxid": 2690837, "species_taxid": 2690837, "relation_to_type": "type", "validated": true, "ani": 79.0036, "matched_fragments": 278, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 78.989, "matched_fragments": 281, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=ATCC 25559", "accession": "GCA_003340105.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 78.9673, "matched_fragments": 251, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella timonensis", "strain": "strain=Marseille-P3135", "accession": "GCA_900184265.1", "taxid": 1871008, "species_taxid": 1871008, "relation_to_type": "type", "validated": true, "ani": 78.9656, "matched_fragments": 271, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_003339975.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 78.9624, "matched_fragments": 254, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=UCSF2243", "accession": "GCA_003339945.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 78.9608, "matched_fragments": 255, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella lenta", "strain": "strain=DSM 2243", "accession": "GCA_000024265.1", "taxid": 84112, "species_taxid": 84112, "relation_to_type": "type", "validated": true, "ani": 78.9509, "matched_fragments": 247, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003339815.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 78.9023, "matched_fragments": 266, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia mucosicola", "strain": "strain=DSM 19490", "accession": "GCA_024623255.1", "taxid": 580026, "species_taxid": 580026, "relation_to_type": "type", "validated": true, "ani": 78.1919, "matched_fragments": 176, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. equolifaciens", "strain": "strain=DSM 19450", "accession": "GCA_000478885.1", "taxid": 2864143, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 78.1556, "matched_fragments": 216, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia hattorii", "strain": "strain=8CFCBH1", "accession": "GCA_011405655.1", "taxid": 2707299, "species_taxid": 2707299, "relation_to_type": "type", "validated": true, "ani": 78.0826, "matched_fragments": 215, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia faecicanis", "strain": "strain=DSM 17537", "accession": "GCA_003725295.1", "taxid": 255723, "species_taxid": 255723, "relation_to_type": "type", "validated": true, "ani": 77.9031, "matched_fragments": 148, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Berryella wangjianweii", "strain": "strain=zg-1050", "accession": "GCA_013201155.1", "taxid": 2734634, "species_taxid": 2734634, "relation_to_type": "type", "validated": true, "ani": 77.4188, "matched_fragments": 141, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 77.351, "matched_fragments": 87, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900554945.1", "gtdb_species": "s__Ellagibacter sp900554945", "ani": 93.9655, "matched_fragments": 362, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Ellagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008831035.1", "gtdb_species": "s__Ellagibacter isourolithinifaciens", "ani": 93.2697, "matched_fragments": 585, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Ellagibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.76", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_900550055.1", "gtdb_species": "s__Senegalimassilia sp900550055", "ani": 79.8846, "matched_fragments": 215, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Senegalimassilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "96.58", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.72", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000236865.1", "gtdb_species": "s__Senegalimassilia anaerobia", "ani": 79.7094, "matched_fragments": 269, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Senegalimassilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.57", "min_intra_species_ani": "95.07", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_905215325.1", "gtdb_species": "s__Senegalimassilia sp905215325", "ani": 79.6821, "matched_fragments": 244, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Senegalimassilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013185065.1", "gtdb_species": "s__CAAEEV01 sp013185065", "ani": 79.5839, "matched_fragments": 269, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004135645.1", "gtdb_species": "s__Senegalimassilia faecalis", "ani": 79.5152, "matched_fragments": 277, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Senegalimassilia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.85", "min_intra_species_ani": "96.73", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_011038975.1", "gtdb_species": "s__CAAEEV01 sp011038975", "ani": 79.284, "matched_fragments": 280, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900170005.1", "gtdb_species": "s__Gordonibacter massiliensis", "ani": 79.1148, "matched_fragments": 275, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009834925.2", "gtdb_species": "s__Eggerthella sp014287365", "ani": 79.0367, "matched_fragments": 276, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.74", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_902386925.1", "gtdb_species": "s__Arabia massiliensis", "ani": 79.0215, "matched_fragments": 260, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Arabia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000210055.1", "gtdb_species": "s__Gordonibacter pamelaeae", "ani": 79.0053, "matched_fragments": 280, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.65", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000024265.1", "gtdb_species": "s__Eggerthella lenta", "ani": 78.9509, "matched_fragments": 247, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.82", "num_clustered_genomes": 72, "status": "-" }, { "accession": "GCA_900754955.1", "gtdb_species": "s__CAAEEV01 sp900754955", "ani": 78.9326, "matched_fragments": 208, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__CAAEEV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900184265.1", "gtdb_species": "s__Eggerthella timonensis", "ani": 78.9171, "matched_fragments": 274, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003339845.1", "gtdb_species": "s__Gordonibacter sp003339845", "ani": 78.8105, "matched_fragments": 285, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Gordonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003725955.1", "gtdb_species": "s__Slackia_A isoflavoniconvertens", "ani": 77.9048, "matched_fragments": 141, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Slackia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.02", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.81", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCA_905215465.1", "gtdb_species": "s__Paratractidigestivibacter sp905215465", "ani": 77.385, "matched_fragments": 65, "total_fragments": 714, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Paratractidigestivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__Ellagibacter", "s__Ellagibacter sp934643285" ], "_genome_taxon": [ "uncultured", "Ellagibacter", "sp.", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__Eggerthellaceae", "g__Ellagibacter", "s__Ellagibacter sp934643285", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "Eggerthellaceae", "Ellagibacter", "Ellagibacter", "sp934643285" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }