{ "type": "genome", "identifier": "GCA_934643405.1", "organism": "uncultured Actinoplanes sp.", "title": "uncultured Actinoplanes sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934643405.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13513725", "wgs_master": "CAKUCL000000000.1", "refseq_category": "na", "taxid": "412396", "species_taxid": "412396", "organism_name": "uncultured Actinoplanes sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_K_16_2625.167", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738664_bin.167", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/643/405/GCA_934643405.1_ERR7738664_bin.167", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Actinoplanes sp." ], "sample_taxid": [ "412396" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "2.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7576474", "Number of Sequences": "484", "Longest Sequences (bp)": "108293", "N50 (bp)": "23747", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "6927", "Average Protein Length": "307.8", "Coding Ratio (%)": "84.4", "Number of rRNAs": "0", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes deccanensis", "strain": "strain=NBRC 13994", "accession": "GCA_016862115.1", "taxid": 113561, "species_taxid": 113561, "relation_to_type": "type", "validated": true, "ani": 82.4713, "matched_fragments": 1491, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes rishiriensis", "strain": "strain=NBRC 108556", "accession": "GCA_016862375.1", "taxid": 1050105, "species_taxid": 1050105, "relation_to_type": "type", "validated": true, "ani": 82.347, "matched_fragments": 1444, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes toevensis", "strain": "strain=NBRC 105298", "accession": "GCA_018332695.1", "taxid": 571911, "species_taxid": 571911, "relation_to_type": "type", "validated": true, "ani": 82.3414, "matched_fragments": 1494, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes subtropicus", "strain": "strain=NRRL B-24665", "accession": "GCA_000721705.1", "taxid": 543632, "species_taxid": 543632, "relation_to_type": "type", "validated": true, "ani": 82.3208, "matched_fragments": 1490, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes atraurantiacus", "strain": "strain=CGMCC 4.6857", "accession": "GCA_900215205.1", "taxid": 1036182, "species_taxid": 1036182, "relation_to_type": "type", "validated": true, "ani": 82.3031, "matched_fragments": 1502, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lichenicola", "strain": "strain=LDG1-01", "accession": "GCA_016785085.1", "taxid": 2802976, "species_taxid": 2802976, "relation_to_type": "type", "validated": true, "ani": 82.203, "matched_fragments": 1475, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes abujensis", "strain": "strain=DSM 45518", "accession": "GCA_014204895.1", "taxid": 882441, "species_taxid": 882441, "relation_to_type": "type", "validated": true, "ani": 82.1478, "matched_fragments": 1434, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes bogorensis", "strain": "strain=NBRC 110975", "accession": "GCA_018829635.1", "taxid": 1610840, "species_taxid": 1610840, "relation_to_type": "type", "validated": true, "ani": 82.1121, "matched_fragments": 1436, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes brasiliensis", "strain": "strain=NBRC 13938", "accession": "GCA_016862015.1", "taxid": 52695, "species_taxid": 52695, "relation_to_type": "type", "validated": true, "ani": 81.9987, "matched_fragments": 1374, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=NBRC 14524", "accession": "GCA_016862295.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 81.3839, "matched_fragments": 1394, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=NBRC 13999", "accession": "GCA_016862415.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 81.3746, "matched_fragments": 1251, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes octamycinicus", "strain": "strain=DSM 45809", "accession": "GCA_014205225.1", "taxid": 135948, "species_taxid": 135948, "relation_to_type": "type", "validated": true, "ani": 81.3688, "matched_fragments": 1405, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=ATCC 31121", "accession": "GCA_003711105.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 81.2957, "matched_fragments": 1287, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=DSM 43866", "accession": "GCA_007829915.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 81.242, "matched_fragments": 1296, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes cyaneus", "strain": "strain=NBRC 14990", "accession": "GCA_016862095.1", "taxid": 52696, "species_taxid": 52696, "relation_to_type": "type", "validated": true, "ani": 80.9681, "matched_fragments": 1301, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 80.829, "matched_fragments": 1229, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes xinjiangensis", "strain": "strain=DSM 45184", "accession": "GCA_003148685.1", "taxid": 512350, "species_taxid": 512350, "relation_to_type": "type", "validated": true, "ani": 80.5578, "matched_fragments": 1249, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 79.1028, "matched_fragments": 861, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 79.0571, "matched_fragments": 740, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 78.9086, "matched_fragments": 973, "total_fragments": 2280, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018332695.1", "gtdb_species": "s__Actinoplanes toevensis", "ani": 82.3659, "matched_fragments": 1490, "total_fragments": 2280, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000721705.1", "gtdb_species": "s__Actinoplanes subtropicus", "ani": 82.3609, "matched_fragments": 1482, "total_fragments": 2280, "gtdb_taxonomy": 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