{
    "type": "genome",
    "identifier": "GCA_934667635.1",
    "organism": "uncultured Treponema sp.",
    "title": "uncultured Treponema sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934667635.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13481010",
        "wgs_master": "CAKUMI000000000.1",
        "refseq_category": "na",
        "taxid": "162155",
        "species_taxid": "162155",
        "organism_name": "uncultured Treponema sp.",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-I-L_G_14_2608.53",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/16",
        "asm_name": "ERR7745545_bin.53",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/667/635/GCA_934667635.1_ERR7745545_bin.53",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-16",
    "dateModified": "2022-04-16",
    "datePublished": "2022-04-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Treponema sp."
        ],
        "sample_taxid": [
            "162155"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Tanzania"
        ],
        "sample_host_location_id": [],
        "data_size": "0.690 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2454596",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "291455",
        "N50 (bp)": "151339",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.2",
        "Number of CDSs": "2115",
        "Average Protein Length": "345.2",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Treponema succinifaciens",
                "strain": "strain=DSM 2489",
                "accession": "GCA_000195275.1",
                "taxid": 167,
                "species_taxid": 167,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.05,
                "matched_fragments": 142,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema berlinense",
                "strain": "strain=ATCC BAA-909",
                "accession": "GCA_900167025.1",
                "taxid": 225004,
                "species_taxid": 225004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4427,
                "matched_fragments": 118,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema porcinum",
                "strain": "strain=ATCC BAA-908",
                "accession": "GCA_900167145.1",
                "taxid": 261392,
                "species_taxid": 261392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7044,
                "matched_fragments": 180,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Treponema rectale",
                "strain": "strain=DSM 103679",
                "accession": "GCA_014202035.1",
                "taxid": 744512,
                "species_taxid": 744512,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.9971,
                "matched_fragments": 66,
                "total_fragments": 805,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900541945.1",
                "gtdb_species": "s__Treponema_D sp900541945",
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                "matched_fragments": 684,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.90",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900317625.1",
                "gtdb_species": "s__Treponema_D sp900317625",
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                "matched_fragments": 540,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002478955.1",
                "gtdb_species": "s__Treponema_D sp002478955",
                "ani": 83.2384,
                "matched_fragments": 555,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "97.79",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002437725.1",
                "gtdb_species": "s__Treponema_D sp002437725",
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                "matched_fragments": 192,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.48",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_017381365.1",
                "gtdb_species": "s__Treponema_D sp017381365",
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                "matched_fragments": 175,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "97.14",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002477955.1",
                "gtdb_species": "s__Treponema_D sp002477955",
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                "matched_fragments": 102,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.37",
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900769325.1",
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                "matched_fragments": 133,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002296965.1",
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                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
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                "mean_intra_species_ani": "99.93",
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                "mean_intra_species_af": "0.91",
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                "status": "-"
            },
            {
                "accession": "GCF_900167145.1",
                "gtdb_species": "s__Treponema_D porcinum",
                "ani": 77.7044,
                "matched_fragments": 180,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
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                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "96.24",
                "mean_intra_species_af": "0.92",
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                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016297405.1",
                "gtdb_species": "s__Treponema_D sp016297405",
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                "matched_fragments": 103,
                "total_fragments": 805,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
                "accession": "GCA_017390125.1",
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                "mean_intra_species_ani": "N/A",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
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            {
                "accession": "GCA_017619795.1",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCF_014334335.1",
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                "matched_fragments": 61,
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.59,
        "cell_length": 0.834,
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        "bacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "c__Spirochaetia",
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        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp900541945"
    ],
    "_genome_taxon": [
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        "Treponema",
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        "d__Bacteria",
        "p__Spirochaetota",
        "c__Spirochaetia",
        "o__Treponematales",
        "f__Treponemataceae",
        "g__Treponema_D",
        "s__Treponema_D sp900541945",
        "Bacteria",
        "Spirochaetota",
        "Spirochaetia",
        "Treponematales",
        "Treponemataceae",
        "Treponema",
        "D",
        "Treponema",
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        "sp900541945"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}