{ "type": "genome", "identifier": "GCA_934699385.1", "organism": "uncultured Bacteroides sp.", "title": "uncultured Bacteroides sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934699385.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13500091", "wgs_master": "CAKUWK000000000.1", "refseq_category": "na", "taxid": "162156", "species_taxid": "162156", "organism_name": "uncultured Bacteroides sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_H_15_CHE1020TZ.10", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7745596_bin.10", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/699/385/GCA_934699385.1_ERR7745596_bin.10", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacteroides sp." ], "sample_taxid": [ "162156" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Nepal" ], "sample_host_location_id": [], "data_size": "1.444 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.38, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5032026", "Number of Sequences": "68", "Longest Sequences (bp)": "314267", "N50 (bp)": "138580", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.4", "Number of CDSs": "3647", "Average Protein Length": "406.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacteroides nordii", "strain": "strain=FDAARGOS_1461", "accession": "GCA_019930665.1", "taxid": 291645, "species_taxid": 291645, "relation_to_type": "type", "validated": true, "ani": 98.721, "matched_fragments": 1483, "total_fragments": 1642, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bacteroides salyersiae", "strain": "strain=DSM 18765", "accession": "GCA_000381365.1", "taxid": 291644, "species_taxid": 291644, "relation_to_type": "type", "validated": true, "ani": 80.6146, "matched_fragments": 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"below_threshold" }, { "organism_name": "Bacteroides fragilis", "strain": "strain=FDAARGOS_1512", "accession": "GCA_020097275.1", "taxid": 817, "species_taxid": 817, "relation_to_type": "type", "validated": true, "ani": 78.5405, "matched_fragments": 370, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides luhongzhouii", "strain": "strain=HF-5141", "accession": "GCA_009193295.2", "taxid": 2650158, "species_taxid": 2650158, "relation_to_type": "type", "validated": true, "ani": 78.4234, "matched_fragments": 357, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=ATCC 43185", "accession": "GCA_025146315.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3758, "matched_fragments": 337, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=NCTC11153", "accession": "GCA_900445505.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2564, "matched_fragments": 389, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=ATCC 8483", "accession": "GCA_025146775.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2403, "matched_fragments": 388, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides zhangwenhongii", "strain": "strain=HF-5287", "accession": "GCA_009193325.2", "taxid": 2650157, "species_taxid": 2650157, "relation_to_type": "type", "validated": true, "ani": 78.2204, "matched_fragments": 322, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=FDAARGOS_1516", "accession": "GCA_020149745.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2204, "matched_fragments": 390, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides ovatus", "strain": "strain=ATCC 8483", "accession": "GCA_001314995.1", "taxid": 28116, "species_taxid": 28116, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2138, "matched_fragments": 390, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides congonensis", "strain": "strain=Marseille-P3132", "accession": "GCA_900130125.1", "taxid": 1871006, "species_taxid": 1871006, "relation_to_type": "type", "validated": true, "ani": 78.1513, "matched_fragments": 366, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides cellulosilyticus", "strain": "strain=DSM 14838", "accession": "GCA_000158035.1", "taxid": 246787, "species_taxid": 246787, "relation_to_type": "type", "validated": true, "ani": 77.6726, "matched_fragments": 314, "total_fragments": 1642, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.38, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000613465.1", "gtdb_species": "s__Bacteroides nordii", "ani": 98.818, "matched_fragments": 1439, "total_fragments": 1642, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.11", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.80", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCA_900762525.1", "gtdb_species": "s__Bacteroides sp900762525", "ani": 92.9898, "matched_fragments": 1073, "total_fragments": 1642, "gtdb_taxonomy": 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