{ "type": "genome", "identifier": "GCA_934754575.1", "organism": "uncultured Clostridium sp.", "title": "uncultured Clostridium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934754575.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13494962", "wgs_master": "CAKVJM000000000.1", "refseq_category": "na", "taxid": "59620", "species_taxid": "59620", "organism_name": "uncultured Clostridium sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_PheChl_Fiber-Hadza-Nepal_E_14_1557.176", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738565_bin.176", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/754/575/GCA_934754575.1_ERR7738565_bin.176", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Clostridium sp." ], "sample_taxid": [ "59620" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.852 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3079750", "Number of Sequences": "207", "Longest Sequences (bp)": "109520", "N50 (bp)": "28659", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.6", "Number of CDSs": "2796", "Average Protein Length": "305.9", "Coding Ratio (%)": "83.3", "Number of rRNAs": "0", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium bornimense", "strain": "strain=type strain: M2/40", "accession": "GCA_000577895.1", "taxid": 1216932, "species_taxid": 1216932, "relation_to_type": "type", "validated": true, "ani": 87.6786, "matched_fragments": 788, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium chauvoei", "strain": "strain=DSM 7528", "accession": "GCA_002327185.1", "taxid": 46867, "species_taxid": 46867, "relation_to_type": "type", "validated": true, "ani": 76.8462, "matched_fragments": 143, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saudiense", "strain": "strain=JCC", "accession": "GCA_000577815.1", "taxid": 1414720, "species_taxid": 1414720, "relation_to_type": "type", "validated": true, "ani": 76.8183, "matched_fragments": 142, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gallinarum", "strain": "strain=Sa3CUN1", "accession": "GCA_014836325.1", "taxid": 2762246, "species_taxid": 2762246, "relation_to_type": "type", "validated": true, "ani": 76.7409, "matched_fragments": 138, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium septicum", "strain": "strain=FDAARGOS_1551", "accession": "GCA_020736665.1", "taxid": 1504, "species_taxid": 1504, "relation_to_type": "type", "validated": true, "ani": 76.6611, "matched_fragments": 137, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=DSM 2631", "accession": "GCA_900129365.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.626, "matched_fragments": 124, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fallax", "strain": "strain=NCTC8380", "accession": "GCA_900461065.1", "taxid": 1533, "species_taxid": 1533, "relation_to_type": "type", "validated": true, "ani": 76.6194, "matched_fragments": 125, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium paraputrificum", "strain": "strain=NCTC11833", "accession": "GCA_900447045.1", "taxid": 29363, "species_taxid": 29363, "relation_to_type": "type", "validated": true, "ani": 76.5637, "matched_fragments": 133, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tertium", "strain": "strain=DSM 2485", "accession": "GCA_017873245.1", "taxid": 1559, "species_taxid": 1559, "relation_to_type": "type", "validated": true, "ani": 76.494, "matched_fragments": 140, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium moniliforme", "strain": "strain=DSM 3984", "accession": "GCA_017873235.1", "taxid": 39489, "species_taxid": 39489, "relation_to_type": "type", "validated": true, "ani": 76.433, "matched_fragments": 139, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium thermobutyricum", "strain": "strain=DSM 4928", "accession": "GCA_002050515.1", "taxid": 29372, "species_taxid": 29372, "relation_to_type": "type", "validated": true, "ani": 76.2791, "matched_fragments": 159, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium massiliamazoniense", "strain": "strain=ND2", "accession": "GCA_001403635.1", "taxid": 1347366, "species_taxid": 1347366, "relation_to_type": "type", "validated": true, "ani": 76.1816, "matched_fragments": 126, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium sardiniense", "strain": "strain=DSM 2632", "accession": "GCA_016907995.1", "taxid": 29369, "species_taxid": 29369, "relation_to_type": "type", "validated": true, "ani": 76.1781, "matched_fragments": 135, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sarcina ventriculi", "strain": "strain=NCTC12966", "accession": "GCA_900456775.1", "taxid": 1267, "species_taxid": 1267, "relation_to_type": "type", "validated": true, "ani": 76.098, "matched_fragments": 122, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium ihumii", "strain": "strain=AP5", "accession": "GCA_000612845.1", "taxid": 1470356, "species_taxid": 1470356, "relation_to_type": "type", "validated": true, "ani": 76.0501, "matched_fragments": 136, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium simiarum", "strain": "strain=MSJ-4", "accession": "GCA_018919175.1", "taxid": 2841506, "species_taxid": 2841506, "relation_to_type": "type", "validated": true, "ani": 76.0117, "matched_fragments": 87, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium intestinale", "strain": "strain=DSM 6191", "accession": "GCA_900130055.1", "taxid": 36845, "species_taxid": 36845, "relation_to_type": "type", "validated": true, "ani": 76.0015, "matched_fragments": 126, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium zeae", "strain": "strain=CSC2", "accession": "GCA_017312485.1", "taxid": 2759022, "species_taxid": 2759022, "relation_to_type": "type", "validated": true, "ani": 75.9352, "matched_fragments": 107, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium mobile", "strain": "strain=MSJ-11", "accession": "GCA_018918285.1", "taxid": 2841512, "species_taxid": 2841512, "relation_to_type": "type", "validated": true, "ani": 75.9243, "matched_fragments": 99, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium acetireducens", "strain": "strain=DSM 10703", "accession": "GCA_001758365.1", "taxid": 76489, "species_taxid": 76489, "relation_to_type": "type", "validated": true, "ani": 75.9053, "matched_fragments": 112, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium gelidum", "strain": "strain=C5S11", "accession": "GCA_019977655.1", "taxid": 704125, "species_taxid": 704125, "relation_to_type": "type", "validated": true, "ani": 75.8737, "matched_fragments": 153, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium hydrogenum", "strain": "strain=CUEA01", "accession": "GCA_021432385.1", "taxid": 2855764, "species_taxid": 2855764, "relation_to_type": "type", "validated": true, "ani": 75.8719, "matched_fragments": 122, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium faecium", "strain": "strain=N37", "accession": "GCA_014836835.1", "taxid": 2762223, "species_taxid": 2762223, "relation_to_type": "type", "validated": true, "ani": 75.8134, "matched_fragments": 113, "total_fragments": 915, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018917145.1", "gtdb_species": "s__Clostridium_AN bornimense_A", "ani": 98.634, "matched_fragments": 825, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AN", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000577895.1", "gtdb_species": "s__Clostridium_AN bornimense", "ani": 87.6786, "matched_fragments": 788, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AN", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002327185.1", "gtdb_species": "s__Clostridium chauvoei", "ani": 76.8304, "matched_fragments": 144, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000577815.1", "gtdb_species": "s__Clostridium saudiense", "ani": 76.8183, "matched_fragments": 142, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.24", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCA_900540255.1", "gtdb_species": "s__Clostridium sp900540255", "ani": 76.796, "matched_fragments": 129, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900129365.1", "gtdb_species": "s__Clostridium_AH fallax", "ani": 76.626, "matched_fragments": 124, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium_AH", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015670405.1", "gtdb_species": "s__Clostridium sp015670405", "ani": 76.6189, "matched_fragments": 135, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017873245.1", "gtdb_species": "s__Clostridium tertium", "ani": 76.494, "matched_fragments": 140, "total_fragments": 915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.32", "min_intra_species_ani": "97.37", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCA_900766315.1", "gtdb_species": "s__Clostridium sp900766315", "ani": 76.4403, "matched_fragments": 158, "total_fragments": 915, "gtdb_taxonomy": 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