{ "type": "genome", "identifier": "GCA_934755065.1", "organism": "uncultured Brachyspira sp.", "title": "uncultured Brachyspira sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934755065.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13494912", "wgs_master": "CAKVKJ000000000.1", "refseq_category": "na", "taxid": "221953", "species_taxid": "221953", "organism_name": "uncultured Brachyspira sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_F_9_RAU0028AZ.90", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738352_bin.90", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/755/065/GCA_934755065.1_ERR7738352_bin.90", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Brachyspira sp." ], "sample_taxid": [ "221953" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Nepal" ], "sample_host_location_id": [], "data_size": "0.754 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2750851", "Number of Sequences": "63", "Longest Sequences (bp)": "178420", "N50 (bp)": "66379", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.8", "Number of CDSs": "2547", "Average Protein Length": "317.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "34", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brachyspira pilosicoli", "strain": "strain=P43/6/78", "accession": "GCA_000325665.1", "taxid": 52584, "species_taxid": 52584, "relation_to_type": "type", "validated": true, "ani": 97.8831, "matched_fragments": 779, "total_fragments": 889, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brachyspira intermedia", "strain": "strain=PWS/A", "accession": "GCA_000223215.1", "taxid": 84377, "species_taxid": 84377, "relation_to_type": "type", "validated": true, "ani": 81.6248, "matched_fragments": 563, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira suanatina", "strain": "strain=AN4859/03", "accession": "GCA_001049755.1", "taxid": 381802, "species_taxid": 381802, "relation_to_type": "type", "validated": true, "ani": 81.4473, "matched_fragments": 528, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hyodysenteriae", "strain": "strain=B78", "accession": "GCA_000383255.1", "taxid": 159, "species_taxid": 159, "relation_to_type": "type", "validated": true, "ani": 81.3667, "matched_fragments": 538, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hyodysenteriae", "strain": "strain=B78", "accession": "GCA_001013005.1", "taxid": 159, "species_taxid": 159, "relation_to_type": "type", "validated": true, "ani": 81.2468, "matched_fragments": 536, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hyodysenteriae", "strain": "strain=B-78", "accession": "GCA_001676785.2", "taxid": 159, "species_taxid": 159, "relation_to_type": "type", "validated": true, "ani": 81.2145, "matched_fragments": 539, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira murdochii", "strain": "strain=DSM 12563", "accession": "GCA_000092845.1", "taxid": 84378, "species_taxid": 84378, "relation_to_type": "type", "validated": true, "ani": 80.9113, "matched_fragments": 523, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira alvinipulli", "strain": "strain=ATCC 51933", "accession": "GCA_000518245.1", "taxid": 84379, "species_taxid": 84379, "relation_to_type": "type", "validated": true, "ani": 80.883, "matched_fragments": 514, "total_fragments": 889, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachyspira hampsonii", "strain": 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001049755.1", "gtdb_species": "s__Brachyspira suanatina", "ani": 81.3848, "matched_fragments": 534, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001676785.2", "gtdb_species": "s__Brachyspira hyodysenteriae", "ani": 81.1786, "matched_fragments": 542, "total_fragments": 889, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Brachyspirae;o__Brachyspirales;f__Brachyspiraceae;g__Brachyspira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.98", 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"g__Brachyspira", "s__Brachyspira pilosicoli", "Bacteria", "Spirochaetota", "Brachyspirae", "Brachyspirales", "Brachyspiraceae", "Brachyspira", "Brachyspira", "pilosicoli" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }