{ "type": "genome", "identifier": "GCA_934772065.1", "organism": "uncultured Alistipes sp.", "title": "uncultured Alistipes sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934772065.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13475707", "wgs_master": "CAKVMK000000000.1", "refseq_category": "na", "taxid": "538949", "species_taxid": "538949", "organism_name": "uncultured Alistipes sp.", "infraspecific_name": "", "isolate": "REFINED_METABAT215_SUBJECT_CONTIGS_1500_ASSEMBLY_K77_MERGED__Pilot_MoBio_Fiber-Hadza-Nepal_M_3_7038.72", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/16", "asm_name": "ERR7738633_bin.72", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/772/065/GCA_934772065.1_ERR7738633_bin.72", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-16", "dateModified": "2022-04-16", "datePublished": "2022-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alistipes sp." ], "sample_taxid": [ "538949" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.752 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2693373", "Number of Sequences": "11", "Longest Sequences (bp)": "483525", "N50 (bp)": "378437", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "2250", "Average Protein Length": "356.0", "Coding Ratio (%)": "89.2", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alistipes dispar", "strain": "strain=5CPEGH6", "accession": "GCA_006542685.1", "taxid": 2585119, "species_taxid": 2585119, "relation_to_type": "type", "validated": true, "ani": 98.9922, "matched_fragments": 795, "total_fragments": 892, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=JC50", "accession": "GCA_000312145.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 83.9244, "matched_fragments": 537, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=JC50", "accession": "GCA_025145645.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 83.9225, "matched_fragments": 547, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes shahii", "strain": "strain=WAL 8301", "accession": "GCA_025145845.1", "taxid": 328814, "species_taxid": 328814, "relation_to_type": "suspected-type", "validated": true, "ani": 83.9012, "matched_fragments": 543, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=FDAARGOS_1578", "accession": "GCA_020735725.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 83.8681, "matched_fragments": 535, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes shahii", "strain": "strain=WAL 8301", "accession": "GCA_000210575.1", "taxid": 328814, "species_taxid": 328814, "relation_to_type": "suspected-type", "validated": true, "ani": 83.8374, "matched_fragments": 540, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes provencensis", "strain": "strain=Marseille-P2431", "accession": "GCA_900083545.1", "taxid": 1816676, "species_taxid": 1816676, "relation_to_type": "type", "validated": true, "ani": 83.2409, "matched_fragments": 531, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes timonensis", "strain": "strain=DSM 25383", "accession": "GCA_900107675.1", "taxid": 1465754, "species_taxid": 1465754, "relation_to_type": "type", "validated": true, "ani": 82.868, "matched_fragments": 514, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_025145285.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 82.0088, "matched_fragments": 542, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes montrealensis", "strain": "strain=kh20", "accession": "GCA_018362775.1", "taxid": 2834113, "species_taxid": 2834113, "relation_to_type": "type", "validated": true, "ani": 81.9536, "matched_fragments": 513, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes indistinctus", "strain": "strain=YIT 12060", "accession": "GCA_025144995.1", "taxid": 626932, "species_taxid": 626932, "relation_to_type": "type", "validated": true, "ani": 76.9857, "matched_fragments": 97, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006542685.1", "gtdb_species": "s__Alistipes dispar", "ani": 98.9922, "matched_fragments": 795, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.96", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCA_019115605.1", "gtdb_species": "s__Alistipes faecigallinarum", "ani": 84.7019, "matched_fragments": 504, "total_fragments": 892, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }