{
    "type": "genome",
    "identifier": "GCA_934828335.1",
    "organism": "Clostridium sp. AF02-29",
    "title": "Clostridium sp. AF02-29",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934828335.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13566100",
        "wgs_master": "CAKVRF000000000.1",
        "refseq_category": "na",
        "taxid": "2292993",
        "species_taxid": "2292993",
        "organism_name": "Clostridium sp. AF02-29",
        "infraspecific_name": "",
        "isolate": "MTG221_bin.34.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG221_bin.34.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/828/335/GCA_934828335.1_MTG221_bin.34.fa",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridium sp. AF02-29"
        ],
        "sample_taxid": [
            "2292993"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.571 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 61.57,
        "contamination": 5.78,
        "strain_heterogeneity": 28.57,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1971528",
        "Number of Sequences": "383",
        "Longest Sequences (bp)": "26473",
        "N50 (bp)": "7100",
        "Gap Ratio (%)": "0.071265",
        "GCcontent (%)": "49.7",
        "Number of CDSs": "1530",
        "Average Protein Length": "291.4",
        "Coding Ratio (%)": "67.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Clostridium fessum",
                "strain": "strain=SNUG30386",
                "accession": "GCA_003024715.1",
                "taxid": 2126740,
                "species_taxid": 2126740,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.7947,
                "matched_fragments": 412,
                "total_fragments": 446,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] aminophilum",
                "strain": "strain=DSM 10710",
                "accession": "GCA_000711825.1",
                "taxid": 1526,
                "species_taxid": 1526,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8863,
                "matched_fragments": 63,
                "total_fragments": 446,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] aminophilum",
                "strain": "strain=F",
                "accession": "GCA_900112885.1",
                "taxid": 1526,
                "species_taxid": 1526,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8863,
                "matched_fragments": 63,
                "total_fragments": 446,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hungatella hathewayi",
                "strain": "strain=DSM 13479",
                "accession": "GCA_000160095.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6212,
                "matched_fragments": 53,
                "total_fragments": 446,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hungatella hathewayi",
                "strain": "strain=DSM 13479",
                "accession": "GCA_025149285.1",
                "taxid": 154046,
                "species_taxid": 154046,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5622,
                "matched_fragments": 56,
                "total_fragments": 446,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 61.57,
            "contamination": 5.78,
            "strain_heterogeneity": 28.57
        },
        "gtdb_result": [
            {
                "accession": "GCF_003024715.1",
                "gtdb_species": "s__Clostridium_Q fessum",
                "ani": 97.7947,
                "matched_fragments": 412,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 31,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016302185.1",
                "gtdb_species": "s__Clostridium_Q sp016302185",
                "ani": 78.0705,
                "matched_fragments": 108,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900547735.1",
                "gtdb_species": "s__Clostridium_Q sp900547735",
                "ani": 77.7356,
                "matched_fragments": 105,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900626075.1",
                "gtdb_species": "s__Clostridium_Q transplantifaecale",
                "ani": 77.6743,
                "matched_fragments": 111,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003435375.1",
                "gtdb_species": "s__Copromonas sp900066535",
                "ani": 77.5539,
                "matched_fragments": 95,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Copromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCA_900555625.1",
                "gtdb_species": "s__Ventrimonas sp900555625",
                "ani": 77.3899,
                "matched_fragments": 56,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900770535.1",
                "gtdb_species": "s__Ventrimonas sp900770535",
                "ani": 77.2493,
                "matched_fragments": 51,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009911305.1",
                "gtdb_species": "s__Clostridium_Q sp009911305",
                "ani": 77.1095,
                "matched_fragments": 91,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910575795.1",
                "gtdb_species": "s__Clostridium_Q sp910575795",
                "ani": 77.1042,
                "matched_fragments": 94,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_018377235.1",
                "gtdb_species": "s__Clostridium_Q sp018377235",
                "ani": 77.054,
                "matched_fragments": 86,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001304875.1",
                "gtdb_species": "s__Ventrisoma faecale",
                "ani": 76.9454,
                "matched_fragments": 85,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrisoma",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000235505.1",
                "gtdb_species": "s__Hungatella_A hathewayi_A",
                "ani": 76.9097,
                "matched_fragments": 55,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Hungatella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_018223375.1",
                "gtdb_species": "s__Clostridium_Q sp000435655",
                "ani": 76.8913,
                "matched_fragments": 87,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Clostridium_Q",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "96.90",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900538475.1",
                "gtdb_species": "s__Ventrimonas sp900538475",
                "ani": 76.607,
                "matched_fragments": 59,
                "total_fragments": 446,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.16,
        "cell_length": 0.434,
        "doubling_h": 0.353,
        "growth_tmp": 33.457,
        "optimum_tmp": 35.173,
        "optimum_ph": 6.947,
        "genome_size": 4165901.003,
        "gc_content": 29.49,
        "coding_genes": 3796.985,
        "rRNA16S_genes": 9.374,
        "tRNA_genes": 78.312,
        "gram_stain": 0.945,
        "sporulation": 0.967,
        "motility": 0.92,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.944,
        "thermophilic_range_tmp": 0.055,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Otoolea",
        "s__Otoolea fessa"
    ],
    "_genome_taxon": [
        "Clostridium",
        "sp.",
        "AF02-29",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Otoolea",
        "s__Otoolea fessa",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Otoolea",
        "Otoolea",
        "fessa"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}