{ "type": "genome", "identifier": "GCA_934832795.1", "organism": "Prevotella copri", "title": "Prevotella copri", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934832795.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566333", "wgs_master": "CAKVTU000000000.1", "refseq_category": "na", "taxid": "165179", "species_taxid": "165179", "organism_name": "Prevotella copri", "infraspecific_name": "", "isolate": "MTG225_bin.46.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG225_bin.46.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/832/795/GCA_934832795.1_MTG225_bin.46.fa", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella copri" ], "sample_taxid": [ "165179" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.994 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3460000", "Number of Sequences": "102", "Longest Sequences (bp)": "139229", "N50 (bp)": "60642", "Gap Ratio (%)": "0.003642", "GCcontent (%)": "45.1", "Number of CDSs": "2777", "Average Protein Length": "357.0", "Coding Ratio (%)": "85.9", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 96.2933, "matched_fragments": 798, "total_fragments": 1103, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 96.1609, "matched_fragments": 823, "total_fragments": 1103, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 96.1103, "matched_fragments": 824, "total_fragments": 1103, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella hominis", "strain": "strain=BCRC 81118", "accession": "GCA_004535825.1", "taxid": 2518605, "species_taxid": 2518605, "relation_to_type": "type", "validated": true, "ani": 84.1777, "matched_fragments": 563, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bivia", "strain": "strain=DSM 20514", "accession": "GCA_000262545.1", "taxid": 28125, "species_taxid": 28125, "relation_to_type": "type", "validated": true, "ani": 78.3143, "matched_fragments": 65, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 78.209, "matched_fragments": 138, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bivia", "strain": "strain=JCVIHMP010", "accession": "GCA_000177315.1", "taxid": 28125, "species_taxid": 28125, "relation_to_type": "type", "validated": true, "ani": 78.102, "matched_fragments": 62, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella scopos", "strain": "strain=W2052", "accession": "GCA_001683355.1", "taxid": 589437, "species_taxid": 589437, "relation_to_type": "type", "validated": true, "ani": 78.0345, "matched_fragments": 95, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 78.0246, "matched_fragments": 76, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bryantii", "strain": "strain=B14", "accession": "GCA_022024235.1", "taxid": 77095, "species_taxid": 77095, "relation_to_type": "type", "validated": true, "ani": 77.8599, "matched_fragments": 118, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella paludivivens", "strain": "strain=DSM 17968", "accession": "GCA_000373185.1", "taxid": 185294, "species_taxid": 185294, "relation_to_type": "type", "validated": true, "ani": 77.2528, "matched_fragments": 98, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella herbatica", "strain": "strain=WR041", "accession": "GCA_017347605.1", "taxid": 2801997, "species_taxid": 2801997, "relation_to_type": "type", "validated": true, "ani": 77.2257, "matched_fragments": 100, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 77.1375, "matched_fragments": 77, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 76.7036, "matched_fragments": 94, "total_fragments": 1103, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000157935.1", "gtdb_species": "s__Prevotella copri", "ani": 96.0614, "matched_fragments": 826, "total_fragments": 1103, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.6733, "mean_intra_species_ani": "96.34", "min_intra_species_ani": "95.85", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.69", "num_clustered_genomes": 97, "status": "inconclusive" }, { "accession": "GCF_015074785.1", "gtdb_species": "s__Prevotella sp015074785", "ani": 95.7748, "matched_fragments": 868, "total_fragments": 1103, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.6733, "mean_intra_species_ani": "96.50", "min_intra_species_ani": "95.88", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.71", "num_clustered_genomes": 45, "status": "inconclusive" }, { "accession": "GCF_019127135.1", "gtdb_species": "s__Prevotella sp900551275", "ani": 95.0387, "matched_fragments": 839, "total_fragments": 1103, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0063, 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