{
    "type": "genome",
    "identifier": "GCA_934834895.1",
    "organism": "Ruthenibacterium lactatiformans",
    "title": "Ruthenibacterium lactatiformans",
    "description": "derived from metagenome; fragmented assembly; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934834895.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13566408",
        "wgs_master": "CAKVXD000000000.1",
        "refseq_category": "na",
        "taxid": "1550024",
        "species_taxid": "1550024",
        "organism_name": "Ruthenibacterium lactatiformans",
        "infraspecific_name": "",
        "isolate": "MTG227_bin.31.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG227_bin.31.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/834/895/GCA_934834895.1_MTG227_bin.31.fa",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ruthenibacterium lactatiformans"
        ],
        "sample_taxid": [
            "1550024"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.652 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.42,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2249944",
        "Number of Sequences": "739",
        "Longest Sequences (bp)": "15834",
        "N50 (bp)": "3292",
        "Gap Ratio (%)": "0.097825",
        "GCcontent (%)": "59.2",
        "Number of CDSs": "1587",
        "Average Protein Length": "261.8",
        "Coding Ratio (%)": "55.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Ruthenibacterium lactatiformans",
                "strain": "strain=585-1",
                "accession": "GCA_000949455.1",
                "taxid": 1550024,
                "species_taxid": 1550024,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.3107,
                "matched_fragments": 324,
                "total_fragments": 329,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7626,
                "matched_fragments": 61,
                "total_fragments": 329,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.42,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000949455.1",
                "gtdb_species": "s__Ruthenibacterium lactatiformans",
                "ani": 99.3107,
                "matched_fragments": 324,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 47,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014799685.1",
                "gtdb_species": "s__Ruthenibacterium sp014799685",
                "ani": 79.673,
                "matched_fragments": 125,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "97.75",
                "mean_intra_species_af": "0.71",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905212515.1",
                "gtdb_species": "s__Ruthenibacterium sp905212515",
                "ani": 79.2751,
                "matched_fragments": 92,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910587145.1",
                "gtdb_species": "s__Ruthenibacterium sp013316265",
                "ani": 79.0165,
                "matched_fragments": 121,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "99.81",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019113785.1",
                "gtdb_species": "s__Ruthenibacterium merdigallinarum",
                "ani": 78.1909,
                "matched_fragments": 112,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018380115.1",
                "gtdb_species": "s__Ruthenibacterium sp018380115",
                "ani": 77.9091,
                "matched_fragments": 90,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.78",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_014287275.1",
                "gtdb_species": "s__Pygmaiobacter sp014287275",
                "ani": 77.304,
                "matched_fragments": 57,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Pygmaiobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019119495.1",
                "gtdb_species": "s__Gemmiger stercorigallinarum",
                "ani": 76.8208,
                "matched_fragments": 50,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002160145.1",
                "gtdb_species": "s__Fournierella sp002160145",
                "ani": 76.6009,
                "matched_fragments": 70,
                "total_fragments": 329,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.11",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4026727.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruthenibacterium",
        "s__Ruthenibacterium lactatiformans"
    ],
    "_genome_taxon": [
        "Ruthenibacterium",
        "lactatiformans",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Ruthenibacterium",
        "s__Ruthenibacterium lactatiformans",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Ruthenibacterium",
        "Ruthenibacterium",
        "lactatiformans"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}