{ "type": "genome", "identifier": "GCA_934835355.1", "organism": "Alistipes communis", "title": "Alistipes communis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934835355.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566502", "wgs_master": "CAKVYT000000000.1", "refseq_category": "na", "taxid": "2585118", "species_taxid": "2585118", "organism_name": "Alistipes communis", "infraspecific_name": "", "isolate": "MTG229_bin.27.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG229_bin.27.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "GCF_934835355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/835/355/GCA_934835355.1_MTG229_bin.27.fa", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Alistipes communis" ], "sample_taxid": [ "2585118" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.800 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2855803", "Number of Sequences": "17", "Longest Sequences (bp)": "499329", "N50 (bp)": "244794", "Gap Ratio (%)": "0.011555", "GCcontent (%)": "59.3", "Number of CDSs": "2293", "Average Protein Length": "362.3", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alistipes communis", "strain": "strain=5CBH24", "accession": "GCA_006542665.1", "taxid": 2585118, "species_taxid": 2585118, "relation_to_type": "type", "validated": true, "ani": 98.6032, "matched_fragments": 887, "total_fragments": 943, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=JC50", "accession": "GCA_000312145.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 80.5087, "matched_fragments": 408, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=JC50", "accession": "GCA_025145645.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 80.481, "matched_fragments": 410, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=FDAARGOS_1578", "accession": "GCA_020735725.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 80.4447, "matched_fragments": 419, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes dispar", "strain": "strain=5CPEGH6", "accession": "GCA_006542685.1", "taxid": 2585119, "species_taxid": 2585119, "relation_to_type": "type", "validated": true, "ani": 80.4411, "matched_fragments": 396, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes shahii", "strain": "strain=WAL 8301", "accession": "GCA_025145845.1", "taxid": 328814, "species_taxid": 328814, 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"ani": 79.8226, "matched_fragments": 409, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes montrealensis", "strain": "strain=kh20", "accession": "GCA_018362775.1", "taxid": 2834113, "species_taxid": 2834113, "relation_to_type": "type", "validated": true, "ani": 79.6406, "matched_fragments": 408, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes megaguti", "strain": "strain=Marseille-P5997", "accession": "GCA_900604385.1", "taxid": 2364787, "species_taxid": 2364787, "relation_to_type": "type", "validated": true, "ani": 79.5298, "matched_fragments": 364, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_025145285.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 79.4771, "matched_fragments": 388, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii subsp. vulgaris", "strain": "strain=3BBH6", "accession": "GCA_006542645.1", "taxid": 2585117, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 79.4647, "matched_fragments": 375, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_000374505.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 79.4633, "matched_fragments": 387, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes ihumii", "strain": "strain=AP11", "accession": "GCA_025144665.1", "taxid": 1470347, "species_taxid": 1470347, "relation_to_type": "type", "validated": true, "ani": 77.2465, "matched_fragments": 155, "total_fragments": 943, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006542665.1", "gtdb_species": "s__Alistipes communis", "ani": 98.6032, "matched_fragments": 887, "total_fragments": 943, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCA_900550375.1", "gtdb_species": "s__Alistipes sp900550375", "ani": 87.6213, "matched_fragments": 548, "total_fragments": 943, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", 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