{
    "type": "genome",
    "identifier": "GCA_934835535.1",
    "organism": "Gemmiger formicilis",
    "title": "Gemmiger formicilis",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934835535.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13566224",
        "wgs_master": "CAKVZH000000000.1",
        "refseq_category": "na",
        "taxid": "745368",
        "species_taxid": "745368",
        "organism_name": "Gemmiger formicilis",
        "infraspecific_name": "",
        "isolate": "MTG223_bin.41.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG223_bin.41.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "GCF_934835535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/835/535/GCA_934835535.1_MTG223_bin.41.fa",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmiger formicilis"
        ],
        "sample_taxid": [
            "745368"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.758 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2688374",
        "Number of Sequences": "53",
        "Longest Sequences (bp)": "265438",
        "N50 (bp)": "89161",
        "Gap Ratio (%)": "0.033849",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "2367",
        "Average Protein Length": "326.8",
        "Coding Ratio (%)": "86.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Subdoligranulum variabile",
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                "accession": "GCA_000157955.1",
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                "species_taxid": 214851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9017,
                "matched_fragments": 377,
                "total_fragments": 870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Subdoligranulum variabile",
                "strain": "strain=DSM 15176",
                "accession": "GCA_025152575.1",
                "taxid": 214851,
                "species_taxid": 214851,
                "relation_to_type": "type",
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                "ani": 80.7017,
                "matched_fragments": 388,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium hattorii",
                "strain": "strain=APC922/41-1",
                "accession": "GCA_003287455.1",
                "taxid": 2935520,
                "species_taxid": 2935520,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3327,
                "matched_fragments": 251,
                "total_fragments": 870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=JCM 31915",
                "accession": "GCA_010509575.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3117,
                "matched_fragments": 237,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium duncaniae",
                "strain": "strain=A2-165",
                "accession": "GCA_000162015.1",
                "taxid": 411483,
                "species_taxid": 411483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2548,
                "matched_fragments": 232,
                "total_fragments": 870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalibacterium gallinarum",
                "strain": "strain=JCM 17207",
                "accession": "GCA_022180365.1",
                "taxid": 2903556,
                "species_taxid": 2903556,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6352,
                "matched_fragments": 183,
                "total_fragments": 870,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fournierella massiliensis",
                "strain": "strain=DSM 100451",
                "accession": "GCA_004345265.1",
                "taxid": 1650663,
                "species_taxid": 1650663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1291,
                "matched_fragments": 175,
                "total_fragments": 870,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900167555.1",
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                "matched_fragments": 754,
                "total_fragments": 870,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 43,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018784445.1",
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                "matched_fragments": 674,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "97.97",
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                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900540595.1",
                "gtdb_species": "s__Gemmiger sp900540595",
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                "matched_fragments": 642,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.09",
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                "mean_intra_species_af": "0.86",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900554145.1",
                "gtdb_species": "s__Gemmiger sp900554145",
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                "matched_fragments": 486,
                "total_fragments": 870,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.15",
                "min_intra_species_ani": "98.15",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004554775.1",
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                "matched_fragments": 571,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
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                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900539695.1",
                "gtdb_species": "s__Gemmiger sp900539695",
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                "matched_fragments": 533,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_003343905.1",
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                "ani": 80.8225,
                "matched_fragments": 414,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Gemmiger",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.523,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3241569.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Gemmiger",
        "s__Gemmiger formicilis"
    ],
    "_genome_taxon": [
        "Gemmiger",
        "formicilis",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Oscillospirales",
        "f__Ruminococcaceae",
        "g__Gemmiger",
        "s__Gemmiger formicilis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Oscillospirales",
        "Ruminococcaceae",
        "Gemmiger",
        "Gemmiger",
        "formicilis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}