{ "type": "genome", "identifier": "GCA_934835735.1", "organism": "Collinsella sp. AF02-46-1", "title": "Collinsella sp. AF02-46-1", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934835735.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566461", "wgs_master": "CAKVZV000000000.1", "refseq_category": "na", "taxid": "2292207", "species_taxid": "2292207", "organism_name": "Collinsella sp. AF02-46-1", "infraspecific_name": "", "isolate": "MTG228_bin.37.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG228_bin.37.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/835/735/GCA_934835735.1_MTG228_bin.37.fa", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Collinsella sp. AF02-46-1" ], "sample_taxid": [ "2292207" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.611 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2147249", "Number of Sequences": "54", "Longest Sequences (bp)": "248800", "N50 (bp)": "78994", "Gap Ratio (%)": "0.003260", "GCcontent (%)": "60.1", "Number of CDSs": "1888", "Average Protein Length": "327.3", "Coding Ratio (%)": "86.3", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 93.2911, "matched_fragments": 579, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 93.197, "matched_fragments": 572, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=NCTC11838", "accession": "GCA_900461335.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 93.1747, "matched_fragments": 581, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella bouchesdurhonensis", "strain": "strain=Marseille-P3296", "accession": "GCA_900155365.1", "taxid": 1907654, "species_taxid": 1907654, "relation_to_type": "type", "validated": true, "ani": 80.2166, "matched_fragments": 246, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 79.7972, "matched_fragments": 240, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_000156215.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 79.7654, "matched_fragments": 264, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 79.6855, "matched_fragments": 271, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella tanakaei", "strain": "strain=YIT 12063", "accession": "GCA_000225705.1", "taxid": 626935, "species_taxid": 626935, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5482, "matched_fragments": 226, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella provencensis", "strain": "strain=Marseille-P3740", "accession": "GCA_900199705.1", "taxid": 1937461, "species_taxid": 1937461, "relation_to_type": "type", "validated": true, "ani": 79.3989, "matched_fragments": 176, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 79.1082, "matched_fragments": 239, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 78.9847, "matched_fragments": 213, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002232035.1", "gtdb_species": "s__Collinsella sp002232035", "ani": 95.1044, "matched_fragments": 570, "total_fragments": 693, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.0836, "mean_intra_species_ani": "95.49", "min_intra_species_ani": "95.12", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", 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