{ "type": "genome", "identifier": "GCA_934835765.1", "organism": "Firmicutes bacterium AF22-6AC", "title": "Firmicutes bacterium AF22-6AC", "description": "contaminated; derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934835765.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566527", "wgs_master": "CAKVZW000000000.1", "refseq_category": "na", "taxid": "2292887", "species_taxid": "2292887", "organism_name": "Firmicutes bacterium AF22-6AC", "infraspecific_name": "", "isolate": "MTG229_bin.52.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG229_bin.52.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/835/765/GCA_934835765.1_MTG229_bin.52.fa", "excluded_from_refseq": "contaminated; derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Firmicutes bacterium AF22-6AC" ], "sample_taxid": [ "2292887" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.61, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2491142", "Number of Sequences": "186", "Longest Sequences (bp)": "70816", "N50 (bp)": "25888", "Gap Ratio (%)": "0.014451", "GCcontent (%)": "47.3", "Number of CDSs": "2138", "Average Protein Length": "328.8", "Coding Ratio (%)": "84.7", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Eisenbergiella tayi", "strain": "strain=DSM 26961", "accession": "GCA_001881565.1", "taxid": 1432052, "species_taxid": 1432052, "relation_to_type": "type", "validated": true, "ani": 77.0132, "matched_fragments": 75, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 76.6937, "matched_fragments": 54, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetatifactor muris", "strain": "strain=DSM 23669", "accession": "GCA_024623325.1", "taxid": 879566, "species_taxid": 879566, "relation_to_type": "type", "validated": true, "ani": 76.6815, "matched_fragments": 103, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 76.4436, "matched_fragments": 82, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 76.4159, "matched_fragments": 82, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 76.3769, "matched_fragments": 50, "total_fragments": 746, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 73.61, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009695995.1", "gtdb_species": "s__Acetatifactor intestinalis", "ani": 97.2395, "matched_fragments": 644, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.98", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.76", "num_clustered_genomes": 18, "status": "conclusive" }, { "accession": "GCA_003447295.1", "gtdb_species": "s__Acetatifactor sp003447295", "ani": 93.14, "matched_fragments": 499, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.71", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003584705.1", "gtdb_species": "s__Acetatifactor sp900066565", "ani": 89.2252, "matched_fragments": 651, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "97.56", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCA_900772845.1", "gtdb_species": "s__Acetatifactor sp900772845", "ani": 88.4018, "matched_fragments": 566, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.92", "min_intra_species_ani": "95.92", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002431915.1", "gtdb_species": "s__Acetatifactor sp002431915", "ani": 87.6503, "matched_fragments": 552, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900771995.1", "gtdb_species": "s__Acetatifactor sp900771995", "ani": 86.8814, "matched_fragments": 562, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900766575.1", "gtdb_species": "s__Acetatifactor sp900766575", "ani": 85.5448, "matched_fragments": 385, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900554205.1", "gtdb_species": "s__Acetatifactor sp900554205", "ani": 77.4111, "matched_fragments": 133, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902766365.1", "gtdb_species": "s__CAG-95 sp902766365", "ani": 77.0786, "matched_fragments": 126, "total_fragments": 746, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Acetatifactor", "s__Acetatifactor intestinalis" ], "_genome_taxon": [ "Firmicutes", "bacterium", "AF22-6AC", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Acetatifactor", "s__Acetatifactor intestinalis", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Acetatifactor", "Acetatifactor", "intestinalis" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }