{ "type": "genome", "identifier": "GCA_934837655.1", "organism": "Lachnospiraceae bacterium AM48-27BH", "title": "Lachnospiraceae bacterium AM48-27BH", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934837655.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566164", "wgs_master": "CAKWCO000000000.1", "refseq_category": "na", "taxid": "2292271", "species_taxid": "2292271", "organism_name": "Lachnospiraceae bacterium AM48-27BH", "infraspecific_name": "", "isolate": "MTG222_bin.36.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG222_bin.36.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/837/655/GCA_934837655.1_MTG222_bin.36.fa", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Lachnospiraceae bacterium AM48-27BH" ], "sample_taxid": [ "2292271" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2808204", "Number of Sequences": "84", "Longest Sequences (bp)": "132961", "N50 (bp)": "51549", "Gap Ratio (%)": "0.010683", "GCcontent (%)": "46.4", "Number of CDSs": "2539", "Average Protein Length": "325.8", "Coding Ratio (%)": "88.4", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium fessum", "strain": "strain=SNUG30386", "accession": "GCA_003024715.1", "taxid": 2126740, "species_taxid": 2126740, "relation_to_type": "type", "validated": true, "ani": 77.686, "matched_fragments": 155, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 77.3313, "matched_fragments": 65, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium edouardi", "strain": "strain=Marseille-P3397", "accession": "GCA_900240245.1", "taxid": 1926283, "species_taxid": 1926283, "relation_to_type": "type", "validated": true, "ani": 77.2282, "matched_fragments": 70, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora algidixylanolytica", "strain": "strain=SPL73", "accession": "GCA_003609635.1", "taxid": 94868, "species_taxid": 94868, "relation_to_type": "type", "validated": true, "ani": 77.1667, "matched_fragments": 62, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella effluvii", "strain": "strain=DSM 24995", "accession": "GCA_003201875.1", "taxid": 1096246, "species_taxid": 1096246, "relation_to_type": "type", "validated": true, "ani": 77.1013, "matched_fragments": 132, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora aerotolerans", "strain": "strain=DSM 5434", "accession": "GCA_000687555.1", "taxid": 36832, "species_taxid": 36832, "relation_to_type": "type", "validated": true, "ani": 77.0857, "matched_fragments": 102, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9507, "matched_fragments": 123, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 76.943, "matched_fragments": 79, "total_fragments": 896, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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