{
    "type": "genome",
    "identifier": "GCA_934837855.1",
    "organism": "[Eubacterium] rectale",
    "title": "[Eubacterium] rectale",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934837855.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13566453",
        "wgs_master": "CAKWDA000000000.1",
        "refseq_category": "na",
        "taxid": "39491",
        "species_taxid": "39491",
        "organism_name": "[Eubacterium] rectale",
        "infraspecific_name": "",
        "isolate": "MTG228_bin.29.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG228_bin.29.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/837/855/GCA_934837855.1_MTG228_bin.29.fa",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "[Eubacterium] rectale"
        ],
        "sample_taxid": [
            "39491"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.813 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2851830",
        "Number of Sequences": "74",
        "Longest Sequences (bp)": "174052",
        "N50 (bp)": "59806",
        "Gap Ratio (%)": "0.035065",
        "GCcontent (%)": "41.7",
        "Number of CDSs": "2639",
        "Average Protein Length": "317.4",
        "Coding Ratio (%)": "88.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseburia faecis",
                "strain": "strain=M72",
                "accession": "GCA_001406815.1",
                "taxid": 301302,
                "species_taxid": 301302,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4837,
                "matched_fragments": 170,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lachnospira eligens",
                "strain": "strain=ATCC 27750",
                "accession": "GCA_000146185.1",
                "taxid": 39485,
                "species_taxid": 39485,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.3131,
                "matched_fragments": 79,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Coprococcus comes",
                "strain": "strain=ATCC 27758",
                "accession": "GCA_025149785.1",
                "taxid": 410072,
                "species_taxid": 410072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0173,
                "matched_fragments": 66,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ramulus",
                "strain": "strain=ATCC 29099",
                "accession": "GCA_000469345.1",
                "taxid": 39490,
                "species_taxid": 39490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7444,
                "matched_fragments": 74,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia inulinivorans",
                "strain": "strain=DSM 16841",
                "accession": "GCA_000174195.1",
                "taxid": 360807,
                "species_taxid": 360807,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6453,
                "matched_fragments": 112,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.635,
                "matched_fragments": 122,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_900537995.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.56,
                "matched_fragments": 119,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_000154065.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3351,
                "matched_fragments": 57,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia hominis",
                "strain": "strain=A2-183",
                "accession": "GCA_000225345.1",
                "taxid": 301301,
                "species_taxid": 301301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.193,
                "matched_fragments": 90,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia porci",
                "strain": "strain=MUC/MUC-530-WT-4D",
                "accession": "GCA_009695765.1",
                "taxid": 2605790,
                "species_taxid": 2605790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9495,
                "matched_fragments": 127,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea longicatena",
                "strain": "strain=DSM 13814",
                "accession": "GCA_025150085.1",
                "taxid": 88431,
                "species_taxid": 88431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8486,
                "matched_fragments": 57,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agathobacter ruminis",
                "strain": "strain=JK623",
                "accession": "GCA_002735305.1",
                "taxid": 1712665,
                "species_taxid": 1712665,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7752,
                "matched_fragments": 80,
                "total_fragments": 909,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000020605.1",
                "gtdb_species": "s__Agathobacter rectalis",
                "ani": 97.902,
                "matched_fragments": 798,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.37",
                "min_intra_species_ani": "96.06",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 151,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900546625.1",
                "gtdb_species": "s__Agathobacter sp900546625",
                "ani": 94.6121,
                "matched_fragments": 729,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "96.96",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900317585.1",
                "gtdb_species": "s__Agathobacter sp900317585",
                "ani": 94.6117,
                "matched_fragments": 635,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_905209075.1",
                "gtdb_species": "s__Agathobacter sp905209075",
                "ani": 81.296,
                "matched_fragments": 315,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900549895.1",
                "gtdb_species": "s__Agathobacter sp900549895",
                "ani": 78.7654,
                "matched_fragments": 90,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900552085.1",
                "gtdb_species": "s__Agathobacter sp900552085",
                "ani": 78.2915,
                "matched_fragments": 110,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "95.54",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900548765.1",
                "gtdb_species": "s__Agathobacter sp900548765",
                "ani": 78.231,
                "matched_fragments": 183,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002735305.1",
                "gtdb_species": "s__Agathobacter ruminis",
                "ani": 77.7752,
                "matched_fragments": 80,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_910587655.1",
                "gtdb_species": "s__Agathobacter sp910587655",
                "ani": 76.8695,
                "matched_fragments": 75,
                "total_fragments": 909,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.23,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3460021.133,
        "gc_content": 40.483,
        "coding_genes": 3210.4,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 59.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Agathobacter",
        "s__Agathobacter rectalis"
    ],
    "_genome_taxon": [
        "[Eubacterium]",
        "rectale",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Agathobacter",
        "s__Agathobacter rectalis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Agathobacter",
        "Agathobacter",
        "rectalis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}