{ "type": "genome", "identifier": "GCA_934837945.1", "organism": "Ruminococcus bromii", "title": "Ruminococcus bromii", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934837945.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566410", "wgs_master": "CAKWDE000000000.1", "refseq_category": "na", "taxid": "40518", "species_taxid": "40518", "organism_name": "Ruminococcus bromii", "infraspecific_name": "", "isolate": "MTG227_bin.33.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG227_bin.33.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/837/945/GCA_934837945.1_MTG227_bin.33.fa", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridioides difficile" ], "sample_taxid": [ "1496" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Clostridium difficile infection" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: New York" ], "sample_host_location_id": [], "data_size": "0.595 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2119803", "Number of Sequences": "26", "Longest Sequences 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1, "status": "-" }, { "accession": "GCA_902766775.1", "gtdb_species": "s__Ruminococcus_E sp902766775", "ani": 90.3348, "matched_fragments": 433, "total_fragments": 695, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902766885.1", "gtdb_species": "s__Ruminococcus_E sp902766885", "ani": 79.2784, "matched_fragments": 282, "total_fragments": 695, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__Ruminococcus_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { 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"g__Ruminococcus_E", "s__Ruminococcus_E bromii_B", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Acutalibacteraceae", "Ruminococcus", "E", "Ruminococcus", "E", "bromii", "B" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }