{
    "type": "genome",
    "identifier": "GCA_934839205.1",
    "organism": "Parabacteroides johnsonii",
    "title": "Parabacteroides johnsonii",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934839205.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13566431",
        "wgs_master": "CAKWHK000000000.1",
        "refseq_category": "na",
        "taxid": "387661",
        "species_taxid": "387661",
        "organism_name": "Parabacteroides johnsonii",
        "infraspecific_name": "",
        "isolate": "MTG228_bin.7.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG228_bin.7.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/839/205/GCA_934839205.1_MTG228_bin.7.fa",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parabacteroides johnsonii"
        ],
        "sample_taxid": [
            "387661"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "1.110 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 60.42,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3847366",
        "Number of Sequences": "253",
        "Longest Sequences (bp)": "68357",
        "N50 (bp)": "24907",
        "Gap Ratio (%)": "0.144748",
        "GCcontent (%)": "45.8",
        "Number of CDSs": "2857",
        "Average Protein Length": "382.3",
        "Coding Ratio (%)": "85.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parabacteroides johnsonii",
                "strain": "strain=DSM 18315",
                "accession": "GCA_025151045.1",
                "taxid": 387661,
                "species_taxid": 387661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.9753,
                "matched_fragments": 1018,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parabacteroides johnsonii",
                "strain": "strain=DSM 18315",
                "accession": "GCA_000156495.1",
                "taxid": 387661,
                "species_taxid": 387661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.9145,
                "matched_fragments": 1012,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=NCTC13052",
                "accession": "GCA_900445495.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1619,
                "matched_fragments": 873,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=ATCC 43184",
                "accession": "GCA_000154105.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1347,
                "matched_fragments": 882,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=ATCC 43184",
                "accession": "GCA_025151215.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1194,
                "matched_fragments": 876,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phocaeicola faecicola",
                "strain": "strain=AGMB03916",
                "accession": "GCA_013618865.1",
                "taxid": 2739389,
                "species_taxid": 2739389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8041,
                "matched_fragments": 52,
                "total_fragments": 1156,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 60.42,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000156495.1",
                "gtdb_species": "s__Parabacteroides johnsonii",
                "ani": 98.9145,
                "matched_fragments": 1012,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "96.67",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000154105.1",
                "gtdb_species": "s__Parabacteroides merdae",
                "ani": 91.1413,
                "matched_fragments": 881,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 85,
                "status": "-"
            },
            {
                "accession": "GCF_014287585.1",
                "gtdb_species": "s__Parabacteroides sp014287585",
                "ani": 89.6759,
                "matched_fragments": 920,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900760525.1",
                "gtdb_species": "s__Parabacteroides sp900760525",
                "ani": 88.2555,
                "matched_fragments": 803,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
                "min_intra_species_ani": "98.92",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900155425.1",
                "gtdb_species": "s__Parabacteroides massiliensis",
                "ani": 88.0549,
                "matched_fragments": 818,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910577325.1",
                "gtdb_species": "s__Parabacteroides sp910577325",
                "ani": 86.298,
                "matched_fragments": 720,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017937385.1",
                "gtdb_species": "s__Parabacteroides sp017937385",
                "ani": 83.8108,
                "matched_fragments": 662,
                "total_fragments": 1156,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.23,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.8,
        "optimum_ph": 7.25,
        "genome_size": 4613080.667,
        "gc_content": 44.34,
        "coding_genes": 3853.0,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 82.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Parabacteroides",
        "s__Parabacteroides johnsonii"
    ],
    "_genome_taxon": [
        "Parabacteroides",
        "johnsonii",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Parabacteroides",
        "s__Parabacteroides johnsonii",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Tannerellaceae",
        "Parabacteroides",
        "Parabacteroides",
        "johnsonii"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}