{ "tc_result": [ { "organism_name": "Ruminococcus bicirculans", "strain": "strain=80/3", "accession": "GCA_000723465.1", "taxid": 1160721, "species_taxid": 1160721, "relation_to_type": "type", "validated": true, "ani": 97.1826, "matched_fragments": 771, "total_fragments": 854, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ruminococcus albus", "strain": "strain=DSM 20455", "accession": "GCA_000621285.1", "taxid": 1264, "species_taxid": 1264, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6381, "matched_fragments": 144, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruminococcus albus", "strain": "strain=7", "accession": "GCA_000179635.2", "taxid": 1264, "species_taxid": 1264, "relation_to_type": "suspected-type", "validated": true, "ani": 77.587, "matched_fragments": 147, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000723465.1", "gtdb_species": "s__Ruminococcus_D bicirculans", "ani": 97.2029, "matched_fragments": 771, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "96.68", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 66, "status": "conclusive" }, { "accession": "GCA_900539095.1", "gtdb_species": "s__Ruminococcus_D sp900539095", "ani": 89.5076, "matched_fragments": 586, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.71", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902800795.1", "gtdb_species": "s__Ruminococcus_D sp902800795", "ani": 78.0757, "matched_fragments": 162, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.42", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902786965.1", "gtdb_species": "s__Ruminococcus_D sp902786965", "ani": 78.0677, "matched_fragments": 138, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.79", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900314975.1", "gtdb_species": "s__Ruminococcus_D sp900314975", "ani": 77.9854, "matched_fragments": 140, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900318545.1", "gtdb_species": "s__Ruminococcus_D sp900318545", "ani": 77.9825, "matched_fragments": 142, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.77", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000621805.1", "gtdb_species": "s__Ruminococcus_D sp000621805", "ani": 77.8886, "matched_fragments": 145, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900319075.1", "gtdb_species": "s__Ruminococcus_D sp900319075", "ani": 77.8284, "matched_fragments": 126, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCA_017484095.1", "gtdb_species": "s__Ruminococcus_D sp017484095", "ani": 77.7328, "matched_fragments": 146, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002391065.1", "gtdb_species": "s__Ruminococcus_D sp002391065", "ani": 77.7133, "matched_fragments": 149, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902767035.1", "gtdb_species": "s__Ruminococcus_D sp902767035", "ani": 77.6939, "matched_fragments": 116, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000179635.2", "gtdb_species": "s__Ruminococcus_D albus", "ani": 77.5677, "matched_fragments": 148, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_002371625.1", "gtdb_species": "s__Ruminococcus_D sp002371625", "ani": 77.5123, "matched_fragments": 105, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000526775.1", "gtdb_species": "s__Ruminococcus_D albus_A", "ani": 77.4296, "matched_fragments": 152, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "97.22", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900109655.1", "gtdb_species": "s__Ruminococcus_D albus_B", "ani": 77.4193, "matched_fragments": 143, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.54", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902762735.1", "gtdb_species": "s__Ruminococcus_D sp902762735", "ani": 77.3626, "matched_fragments": 138, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900315755.1", "gtdb_species": "s__Ruminococcus sp900315755", "ani": 77.2415, "matched_fragments": 57, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902797535.1", "gtdb_species": "s__Ruminococcus_D sp902797535", "ani": 76.7154, "matched_fragments": 65, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruminococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.78", "num_clustered_genomes": 2, "status": "-" } ] }