{ "type": "genome", "identifier": "GCA_934849535.1", "organism": "Agathobaculum butyriciproducens", "title": "Agathobaculum butyriciproducens", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934849535.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566817", "wgs_master": "CAKWSL000000000.1", "refseq_category": "na", "taxid": "1628085", "species_taxid": "1628085", "organism_name": "Agathobaculum butyriciproducens", "infraspecific_name": "", "isolate": "MTG235_bin.7.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG235_bin.7.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/849/535/GCA_934849535.1_MTG235_bin.7.fa", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Agathobaculum butyriciproducens" ], "sample_taxid": [ "1628085" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.620 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.11, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2172556", "Number of Sequences": "169", "Longest Sequences (bp)": "93093", "N50 (bp)": "23907", "Gap Ratio (%)": "0.013578", "GCcontent (%)": "56.1", "Number of CDSs": "1978", "Average Protein Length": "301.6", "Coding Ratio (%)": "82.4", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Butyricicoccus faecihominis", "strain": "strain=JCM 31056", "accession": "GCA_016586375.1", "taxid": 1712515, "species_taxid": 1712515, "relation_to_type": "type", "validated": true, "ani": 96.1338, "matched_fragments": 591, "total_fragments": 649, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Butyricicoccus faecihominis", "strain": "strain=JCM 31056", "accession": "GCA_014648015.1", "taxid": 1712515, "species_taxid": 1712515, "relation_to_type": "type", "validated": true, "ani": 96.1277, "matched_fragments": 597, "total_fragments": 649, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Agathobaculum desmolans", "strain": "strain=ATCC 43058", "accession": "GCA_000701665.1", "taxid": 39484, "species_taxid": 39484, "relation_to_type": "type", "validated": true, "ani": 79.432, "matched_fragments": 275, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricicoccus pullicaecorum", "strain": "strain=DSM 23266", "accession": "GCA_900167005.1", "taxid": 501571, "species_taxid": 501571, "relation_to_type": "type", "validated": true, "ani": 78.5924, "matched_fragments": 173, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intestinibacillus massiliensis", "strain": "strain=type strain: Marseille-P3216", "accession": "GCA_900155735.1", "taxid": 1871029, "species_taxid": 1871029, "relation_to_type": "type", "validated": true, "ani": 78.4624, "matched_fragments": 159, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricicoccus intestinisimiae", "strain": "strain=MSJd-7", "accession": "GCA_018918345.1", "taxid": 2841509, "species_taxid": 2841509, "relation_to_type": "type", "validated": true, "ani": 78.0205, "matched_fragments": 111, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricicoccus porcorum", "strain": "strain=BB10", "accession": "GCA_002157465.1", "taxid": 1945634, "species_taxid": 1945634, "relation_to_type": "type", "validated": true, "ani": 77.8684, "matched_fragments": 107, "total_fragments": 649, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 86.11, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003096535.1", "gtdb_species": "s__Agathobaculum butyriciproducens", "ani": 98.6776, "matched_fragments": 591, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.66", "min_intra_species_ani": "95.68", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 34, "status": "conclusive" }, { "accession": "GCA_900544475.1", "gtdb_species": "s__Agathobaculum sp900544475", "ani": 83.5462, "matched_fragments": 327, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003481705.1", "gtdb_species": "s__Agathobaculum sp003481705", "ani": 83.464, "matched_fragments": 423, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.82", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900625105.1", "gtdb_species": "s__Agathobaculum sp900625105", "ani": 80.9804, "matched_fragments": 337, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019113065.1", "gtdb_species": "s__Agathobaculum stercoravium", "ani": 80.6917, "matched_fragments": 282, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.25", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900555465.1", "gtdb_species": "s__Agathobaculum intestinigallinarum", "ani": 80.691, "matched_fragments": 218, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.06", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019115615.1", "gtdb_species": "s__Agathobaculum merdavium", "ani": 80.4722, "matched_fragments": 259, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019115185.1", "gtdb_species": "s__Agathobaculum merdipullorum", "ani": 80.1396, "matched_fragments": 249, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900557315.1", "gtdb_species": "s__Agathobaculum sp900557315", "ani": 80.0319, "matched_fragments": 197, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019114345.1", "gtdb_species": "s__Agathobaculum pullistercoris", "ani": 79.8821, "matched_fragments": 271, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "98.13", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.78", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_019115425.1", "gtdb_species": "s__Agathobaculum merdigallinarum", "ani": 79.8534, "matched_fragments": 260, "total_fragments": 649, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Butyricicoccaceae;g__Agathobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.23, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2809383.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Butyricicoccaceae", "g__Agathobaculum", "s__Agathobaculum butyriciproducens" ], "_genome_taxon": [ "Agathobaculum", "butyriciproducens", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Butyricicoccaceae", "g__Agathobaculum", "s__Agathobaculum butyriciproducens", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Butyricicoccaceae", "Agathobaculum", "Agathobaculum", "butyriciproducens" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }