{ "type": "genome", "identifier": "GCA_934852815.1", "organism": "Clostridium sp. AM22-11AC", "title": "Clostridium sp. AM22-11AC", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF NEW SOUTH WALES", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934852815.1", "bioproject": "PRJEB50699", "biosample": "SAMEA13566866", "wgs_master": "CAKWTR000000000.1", "refseq_category": "na", "taxid": "2293024", "species_taxid": "2293024", "organism_name": "Clostridium sp. AM22-11AC", "infraspecific_name": "", "isolate": "MTG235_bin.56.fa", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/30", "asm_name": "MTG235_bin.56.fa", "submitter": "UNIVERSITY OF NEW SOUTH WALES", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/852/815/GCA_934852815.1_MTG235_bin.56.fa", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-30", "dateModified": "2022-07-30", "datePublished": "2022-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium sp. AM22-11AC" ], "sample_taxid": [ "2293024" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.894 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 80.73, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3138384", "Number of Sequences": "236", "Longest Sequences (bp)": "60435", "N50 (bp)": "19384", "Gap Ratio (%)": "0.102728", "GCcontent (%)": "44.2", "Number of CDSs": "2667", "Average Protein Length": "325.4", "Coding Ratio (%)": "83.0", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", 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1917870, "species_taxid": 1917870, "relation_to_type": "type", "validated": true, "ani": 77.8276, "matched_fragments": 67, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5777, "matched_fragments": 162, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 77.4711, "matched_fragments": 167, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4692, "matched_fragments": 167, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fessum", "strain": "strain=SNUG30386", "accession": "GCA_003024715.1", "taxid": 2126740, "species_taxid": 2126740, "relation_to_type": "type", "validated": true, "ani": 77.3902, "matched_fragments": 98, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 2885351, "relation_to_type": "type", "validated": true, "ani": 77.0084, "matched_fragments": 60, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia luti", "strain": "strain=DSM 14534", "accession": "GCA_009707925.1", "taxid": 89014, "species_taxid": 89014, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9151, "matched_fragments": 74, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium edouardi", "strain": "strain=Marseille-P3397", "accession": "GCA_900240245.1", "taxid": 1926283, "species_taxid": 1926283, "relation_to_type": "type", "validated": true, "ani": 76.894, "matched_fragments": 75, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia intestinalis", "strain": "strain=L1-82", "accession": "GCA_000156535.1", "taxid": 166486, "species_taxid": 166486, "relation_to_type": "type", "validated": true, "ani": 76.8574, "matched_fragments": 55, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia caecimuris", "strain": "strain=DSM 29492", "accession": "GCA_024622975.1", "taxid": 1796615, "species_taxid": 1796615, "relation_to_type": "type", "validated": true, "ani": 76.8145, "matched_fragments": 53, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=JCM 1471", "accession": "GCA_010669205.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7718, "matched_fragments": 54, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_014131715.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7288, "matched_fragments": 57, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_000439125.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6929, "matched_fragments": 58, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6882, "matched_fragments": 55, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea longicatena", "strain": "strain=DSM 13814", "accession": "GCA_025150085.1", "taxid": 88431, "species_taxid": 88431, "relation_to_type": "type", "validated": true, "ani": 76.3643, "matched_fragments": 51, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia coccoides", "strain": "strain=DSM 935", "accession": "GCA_004340925.1", "taxid": 1532, "species_taxid": 1532, "relation_to_type": "type", "validated": true, "ani": 76.3071, "matched_fragments": 62, "total_fragments": 933, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 80.73, 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