{
    "type": "genome",
    "identifier": "GCA_934852955.1",
    "organism": "Firmicutes bacterium AF36-3BH",
    "title": "Firmicutes bacterium AF36-3BH",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934852955.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13566797",
        "wgs_master": "CAKWUB000000000.1",
        "refseq_category": "na",
        "taxid": "2292889",
        "species_taxid": "2292889",
        "organism_name": "Firmicutes bacterium AF36-3BH",
        "infraspecific_name": "",
        "isolate": "MTG234_bin.55.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG234_bin.55.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/852/955/GCA_934852955.1_MTG234_bin.55.fa",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Clostridioides difficile"
        ],
        "sample_taxid": [
            "1496"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Clostridium difficile infection"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: New York"
        ],
        "sample_host_location_id": [],
        "data_size": "0.787 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2803806",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "319509",
        "N50 (bp)": "143528",
        "Gap Ratio (%)": "0.004280",
        "GCcontent (%)": "38.3",
        "Number of CDSs": "2391",
        "Average Protein Length": "346.3",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "1",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "matched_fragments": 774,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.67",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 17,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900556575.1",
                "gtdb_species": "s__UBA4716 sp900556575",
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                "matched_fragments": 76,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__UBA4716",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910585485.1",
                "gtdb_species": "s__CAG-41 sp910585485",
                "ani": 78.535,
                "matched_fragments": 216,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010206265.1",
                "gtdb_species": "s__CAG-41 sp010206265",
                "ani": 78.4773,
                "matched_fragments": 247,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.79",
                "min_intra_species_ani": "97.79",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910579415.1",
                "gtdb_species": "s__CAG-41 sp910579415",
                "ani": 78.1704,
                "matched_fragments": 220,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001941225.1",
                "gtdb_species": "s__CAG-41 sp001941225",
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                "matched_fragments": 222,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905199755.1",
                "gtdb_species": "s__UBA4716 sp905199755",
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                "matched_fragments": 101,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__UBA4716",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910585795.1",
                "gtdb_species": "s__CAG-41 sp910585795",
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                "matched_fragments": 173,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017406485.1",
                "gtdb_species": "s__CAG-41 sp017406485",
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                "matched_fragments": 95,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__CAG-41",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002438865.1",
                "gtdb_species": "s__UBA4716 sp002438865",
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                "matched_fragments": 76,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__UBA4716",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.40",
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                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017443895.1",
                "gtdb_species": "s__12844 sp017443895",
                "ani": 76.7938,
                "matched_fragments": 104,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__12844",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017483065.1",
                "gtdb_species": "s__HGM11525 sp017483065",
                "ani": 76.7267,
                "matched_fragments": 50,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1381;f__UBA1381;g__HGM11525",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__UBA1381",
        "f__UBA1381",
        "g__Hominilimicola",
        "s__Hominilimicola fabiformis"
    ],
    "_genome_taxon": [
        "Firmicutes",
        "bacterium",
        "AF36-3BH",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__UBA1381",
        "f__UBA1381",
        "g__Hominilimicola",
        "s__Hominilimicola fabiformis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "UBA1381",
        "UBA1381",
        "Hominilimicola",
        "Hominilimicola",
        "fabiformis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}