{
    "type": "genome",
    "identifier": "GCA_934868795.1",
    "organism": "[Ruminococcus] torques",
    "title": "[Ruminococcus] torques",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF NEW SOUTH WALES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934868795.1",
        "bioproject": "PRJEB50699",
        "biosample": "SAMEA13567313",
        "wgs_master": "CAKXAD000000000.1",
        "refseq_category": "na",
        "taxid": "33039",
        "species_taxid": "33039",
        "organism_name": "[Ruminococcus] torques",
        "infraspecific_name": "",
        "isolate": "MTG243_bin.65.fa",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/07/30",
        "asm_name": "MTG243_bin.65.fa",
        "submitter": "UNIVERSITY OF NEW SOUTH WALES",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/868/795/GCA_934868795.1_MTG243_bin.65.fa",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-07-30",
    "dateModified": "2022-07-30",
    "datePublished": "2022-07-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "[Ruminococcus] torques"
        ],
        "sample_taxid": [
            "33039"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.616 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 78.65,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2149692",
        "Number of Sequences": "341",
        "Longest Sequences (bp)": "30964",
        "N50 (bp)": "9361",
        "Gap Ratio (%)": "0.068196",
        "GCcontent (%)": "42.0",
        "Number of CDSs": "1711",
        "Average Protein Length": "304.4",
        "Coding Ratio (%)": "72.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "[Ruminococcus] torques",
                "strain": "strain=ATCC 27756",
                "accession": "GCA_000153925.1",
                "taxid": 33039,
                "species_taxid": 33039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.4729,
                "matched_fragments": 505,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Mediterraneibacter catenae",
                "strain": "strain=SW178",
                "accession": "GCA_008691045.1",
                "taxid": 2594882,
                "species_taxid": 2594882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9683,
                "matched_fragments": 135,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_000155205.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.671,
                "matched_fragments": 121,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] lactaris",
                "strain": "strain=ATCC 29176",
                "accession": "GCA_025152405.1",
                "taxid": 46228,
                "species_taxid": 46228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5899,
                "matched_fragments": 122,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_025152275.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2096,
                "matched_fragments": 121,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=JCM6515",
                "accession": "GCA_008121495.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.0983,
                "matched_fragments": 118,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_000169475.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.0789,
                "matched_fragments": 119,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Ruminococcus] gnavus",
                "strain": "strain=ATCC 29149",
                "accession": "GCA_002959615.1",
                "taxid": 33038,
                "species_taxid": 33038,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.0772,
                "matched_fragments": 116,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Faecalicatena faecalis",
                "strain": "strain=AGMB00832",
                "accession": "GCA_012524165.2",
                "taxid": 2726362,
                "species_taxid": 2726362,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9956,
                "matched_fragments": 83,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea formicigenerans",
                "strain": "strain=ATCC 27755",
                "accession": "GCA_000169235.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5832,
                "matched_fragments": 58,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dorea formicigenerans",
                "strain": "strain=ATCC 27755",
                "accession": "GCA_025150245.1",
                "taxid": 39486,
                "species_taxid": 39486,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.5491,
                "matched_fragments": 59,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schaedlerella arabinosiphila",
                "strain": "strain=DSM 106076",
                "accession": "GCA_003885045.1",
                "taxid": 2044587,
                "species_taxid": 2044587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.45,
                "matched_fragments": 50,
                "total_fragments": 547,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 78.65,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000153925.1",
                "gtdb_species": "s__Mediterraneibacter torques",
                "ani": 99.4729,
                "matched_fragments": 505,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 25,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900556835.1",
                "gtdb_species": "s__Faecalimonas sp900556835",
                "ani": 86.7213,
                "matched_fragments": 79,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Faecalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905209865.1",
                "gtdb_species": "s__Mediterraneibacter sp900752395",
                "ani": 84.2196,
                "matched_fragments": 348,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002159505.1",
                "gtdb_species": "s__Mediterraneibacter ornithocaccae",
                "ani": 77.9289,
                "matched_fragments": 140,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "97.52",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019119995.1",
                "gtdb_species": "s__Mediterraneibacter faecavium",
                "ani": 77.8151,
                "matched_fragments": 131,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018228665.1",
                "gtdb_species": "s__UBA9414 sp003458885",
                "ani": 77.6907,
                "matched_fragments": 71,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA9414",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000155205.1",
                "gtdb_species": "s__Mediterraneibacter lactaris",
                "ani": 77.671,
                "matched_fragments": 121,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_019113645.1",
                "gtdb_species": "s__Mediterraneibacter vanvlietii",
                "ani": 77.6442,
                "matched_fragments": 133,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019119675.1",
                "gtdb_species": "s__Mediterraneibacter faecipullorum",
                "ani": 77.5662,
                "matched_fragments": 120,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019120575.1",
                "gtdb_species": "s__Mediterraneibacter quadrami",
                "ani": 77.3725,
                "matched_fragments": 89,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016902345.1",
                "gtdb_species": "s__Mediterraneibacter glycyrrhizinilyticus_A",
                "ani": 77.3582,
                "matched_fragments": 96,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019116885.1",
                "gtdb_species": "s__Mediterraneibacter pullistercoris",
                "ani": 77.2913,
                "matched_fragments": 102,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019120075.1",
                "gtdb_species": "s__Mediterraneibacter excrementigallinarum_A",
                "ani": 77.2569,
                "matched_fragments": 86,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.40",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_019118885.1",
                "gtdb_species": "s__Mediterraneibacter surreyensis",
                "ani": 77.2308,
                "matched_fragments": 128,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_008121495.1",
                "gtdb_species": "s__Ruminococcus_B gnavus",
                "ani": 77.0983,
                "matched_fragments": 118,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ruminococcus_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.58",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 102,
                "status": "-"
            },
            {
                "accession": "GCA_019119745.1",
                "gtdb_species": "s__Mediterraneibacter gallistercoris",
                "ani": 77.0857,
                "matched_fragments": 122,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019117305.1",
                "gtdb_species": "s__Mediterraneibacter merdigallinarum",
                "ani": 76.5992,
                "matched_fragments": 82,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019116845.1",
                "gtdb_species": "s__Mediterraneibacter stercoravium",
                "ani": 76.5205,
                "matched_fragments": 94,
                "total_fragments": 547,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Mediterraneibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "97.95",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.2,
        "optimum_ph": null,
        "genome_size": 3191112.25,
        "gc_content": 41.07,
        "coding_genes": 2798.0,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Mediterraneibacter",
        "s__Mediterraneibacter torques"
    ],
    "_genome_taxon": [
        "[Ruminococcus]",
        "torques",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Mediterraneibacter",
        "s__Mediterraneibacter torques",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Mediterraneibacter",
        "Mediterraneibacter",
        "torques"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}